A map of human PRDM9 binding provides evidence for novel behaviors of PRDM9 and other zinc-finger proteins in meiosis
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Title
A map of human PRDM9 binding provides evidence for novel behaviors of PRDM9 and other zinc-finger proteins in meiosis
Authors
Keywords
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Journal
eLife
Volume 6, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2017-10-26
DOI
10.7554/elife.28383
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Note: Only part of the references are listed.- In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites
- (2017) Corinne Grey et al. GENOME RESEARCH
- PRDM9 interactions with other proteins provide a link between recombination hotspots and the chromosomal axis in meiosis
- (2017) Emil D. Parvanov et al. MOLECULAR BIOLOGY OF THE CELL
- KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks
- (2017) Michaël Imbeault et al. NATURE
- Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates
- (2017) Zachary Baker et al. eLife
- The Landscape of Mouse Meiotic Double-Strand Break Formation, Processing, and Repair
- (2016) Julian Lange et al. CELL
- The evolutionary turnover of recombination hot spots contributes to speciation in mice
- (2016) Fatima Smagulova et al. GENES & DEVELOPMENT
- Re-engineering the zinc fingers of PRDM9 reverses hybrid sterility in mice
- (2016) Benjamin Davies et al. NATURE
- Health and population effects of rare gene knockouts in adult humans with related parents
- (2016) V. M. Narasimhan et al. SCIENCE
- Writing of H3K4Me3 overcomes epigenetic silencing in a sustained but context-dependent manner
- (2016) David Cano-Rodriguez et al. Nature Communications
- The Meiotic Recombination Activator PRDM9 Trimethylates Both H3K36 and H3K4 at Recombination Hotspots In Vivo
- (2016) Natalie R. Powers et al. PLoS Genetics
- Nuclear localization of PRDM9 and its role in meiotic chromatin modifications and homologous synapsis
- (2015) Fengyun Sun et al. CHROMOSOMA
- The KRAB zinc finger protein ZFP809 is required to initiate epigenetic silencing of endogenous retroviruses
- (2015) Gernot Wolf et al. GENES & DEVELOPMENT
- DNA methylation restrains transposons from adopting a chromatin signature permissive for meiotic recombination
- (2015) Natasha Zamudio et al. GENES & DEVELOPMENT
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Active promoters give rise to false positive ‘Phantom Peaks’ in ChIP-seq experiments
- (2015) Dhawal Jain et al. NUCLEIC ACIDS RESEARCH
- The MEME Suite
- (2015) Timothy L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage
- (2015) Michael Walker et al. Epigenetics & Chromatin
- PRDM9 Drives Evolutionary Erosion of Hotspots in Mus musculus through Haplotype-Specific Initiation of Meiotic Recombination
- (2015) Christopher L. Baker et al. PLoS Genetics
- Multimer Formation Explains Allelic Suppression of PRDM9 Recombination Hotspots
- (2015) Christopher L. Baker et al. PLoS Genetics
- Setdb1is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells
- (2014) Sheng Liu et al. GENES & DEVELOPMENT
- PRDM9 binding organizes hotspot nucleosomes and limits Holliday junction migration
- (2014) C. L. Baker et al. GENOME RESEARCH
- Trimethylation of Histone H3 Lysine 36 by Human Methyltransferase PRDM9 Protein
- (2014) Mohammad S. Eram et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons
- (2014) Frank M. J. Jacobs et al. NATURE
- Mouse tetrad analysis provides insights into recombination mechanisms and hotspot evolutionary dynamics
- (2014) Francesca Cole et al. NATURE GENETICS
- Zinc Fingers Function Cooperatively with KRAB Domain for Nuclear Localization of KRAB-Containing Zinc Finger Proteins
- (2014) Wei Wang et al. PLoS One
- Recombination initiation maps of individual human genomes
- (2014) F. Pratto et al. SCIENCE
- Primate evolution of the recombination regulator PRDM9
- (2014) Jerrod J. Schwartz et al. Nature Communications
- Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations
- (2014) Yao-Cheng Lin et al. Nature Communications
- Common and low-frequency variants associated with genome-wide recombination rate
- (2013) Augustine Kong et al. NATURE GENETICS
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- De novo prediction of DNA-binding specificities for Cys2His2 zinc finger proteins
- (2013) Anton V. Persikov et al. NUCLEIC ACIDS RESEARCH
- ZNF408 is mutated in familial exudative vitreoretinopathy and is crucial for the development of zebrafish retinal vasculature
- (2013) R. W. J. Collin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular Basis for the Regulation of the H3K4 Methyltransferase Activity of PRDM9
- (2013) Hong Wu et al. Cell Reports
- A Genome-wide Map of CTCF Multivalency Redefines the CTCF Code
- (2013) Hirotaka Nakahashi et al. Cell Reports
- Genetic Recombination Is Targeted towards Gene Promoter Regions in Dogs
- (2013) Adam Auton et al. PLoS Genetics
- DUX4 Binding to Retroelements Creates Promoters That Are Active in FSHD Muscle and Testis
- (2013) Janet M. Young et al. PLoS Genetics
- DNA binding specificities of the long zinc-finger recombination protein PRDM9
- (2013) Timothy Billings et al. GENOME BIOLOGY
- TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells
- (2012) H. M. Rowe et al. GENOME RESEARCH
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- (2012) S. G. Landt et al. GENOME RESEARCH
- Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- (2012) J. Wang et al. GENOME RESEARCH
- Genetic recombination is directed away from functional genomic elements in mice
- (2012) Kevin Brick et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- A Fine-Scale Chimpanzee Genetic Map from Population Sequencing
- (2012) A. Auton et al. SCIENCE
- The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner
- (2012) Frank Sleutels et al. Epigenetics & Chromatin
- Interallelic and Intergenic Incompatibilities of the Prdm9 (Hst1) Gene in Mouse Hybrid Sterility
- (2012) Petr Flachs et al. PLoS Genetics
- Functional Analysis of KAP1 Genomic Recruitment
- (2011) S. Iyengar et al. MOLECULAR AND CELLULAR BIOLOGY
- Genome-wide analysis reveals novel molecular features of mouse recombination hotspots
- (2011) Fatima Smagulova et al. NATURE
- The landscape of recombination in African Americans
- (2011) Anjali G. Hinch et al. NATURE
- The Human Epigenome Browser at Washington University
- (2011) Xin Zhou et al. NATURE METHODS
- Variants of the protein PRDM9 differentially regulate a set of human meiotic recombination hotspots highly active in African populations
- (2011) I. L. Berg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mouse PRDM9 DNA-Binding Specificity Determines Sites of Histone H3 Lysine 4 Trimethylation for Initiation of Meiotic Recombination
- (2011) Corinne Grey et al. PLOS BIOLOGY
- The Case of the Fickle Fingers: How the PRDM9 Zinc Finger Protein Specifies Meiotic Recombination Hotspots in Humans
- (2011) Laure Ségurel et al. PLOS BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
- (2010) G. Lunter et al. GENOME RESEARCH
- BORIS (CTCFL) Is Not Expressed in Most Human Breast Cell Lines and High Grade Breast Carcinomas
- (2010) William C. Hines et al. PLoS One
- Prdm9 Controls Activation of Mammalian Recombination Hotspots
- (2010) E. D. Parvanov et al. SCIENCE
- Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination
- (2010) S. Myers et al. SCIENCE
- PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice
- (2010) F. Baudat et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Distinct histone modifications define initiation and repair of meiotic recombination in the mouse
- (2009) Jérôme Buard et al. EMBO JOURNAL
- Mammalian SUMO E3-ligases PIAS1 and PIAS4 promote responses to DNA double-strand breaks
- (2009) Yaron Galanty et al. NATURE
- A Versatile Viral System for Expression and Depletion of Proteins in Mammalian Cells
- (2009) Eric Campeau et al. PLoS One
- Predicting DNA recognition by Cys2His2 zinc finger proteins
- (2008) Anton V. Persikov et al. BIOINFORMATICS
- Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites
- (2008) Valérie Borde et al. EMBO JOURNAL
- A common sequence motif associated with recombination hot spots and genome instability in humans
- (2008) Simon Myers et al. NATURE GENETICS
- A Mouse Speciation Gene Encodes a Meiotic Histone H3 Methyltransferase
- (2008) O. Mihola et al. SCIENCE
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