Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous network

KATZLGO: Large-scale Prediction of LncRNA Functions by Using the KATZ Measure Based on Multiple Networks

(2017) Zuping Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Integrating Multiple Heterogeneous Networks for Novel LncRNA-disease Association Inference

(2017) Jingpu Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Inferring MicroRNA-Disease Associations by Random Walk on a Heterogeneous Network with Multiple Data Sources

(2017) Yuansheng Liu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Prediction of lncRNA-protein interactions using HeteSim scores based on heterogeneous networks

(2017) Yun Xiao et al.   Scientific Reports

PredRSA: a gradient boosted regression trees approach for predicting protein solvent accessibility

(2016) Chao Fan et al.   BMC BIOINFORMATICS

The lncRNA HOTAIRM1 regulates the degradation of PML-RARA oncoprotein and myeloid cell differentiation by enhancing the autophagy pathway

(2016) Zhen-Hua Chen et al.   CELL DEATH AND DIFFERENTIATION

HOTAIRM1 as a potential biomarker for diagnosis of colorectal cancer functions the role in the tumour suppressor

(2016) Ledong Wan et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Long non-coding RNAs in normal and malignant hematopoiesis

(2016) Lucia Nobili et al.   Oncotarget

Which statistical significance test best detects oncomiRNAs in cancer tissues? An exploratory analysis

(2016) Wei Tang et al.   Oncotarget

Exploiting ontology graph for predicting sparsely annotated gene function

(2015) Sheng Wang et al.   BIOINFORMATICS

Revealing protein–lncRNA interaction

(2015) Fabrizio Ferrè et al.   BRIEFINGS IN BIOINFORMATICS

Data Fusion by Matrix Factorization

(2015) Marinka Zitnik et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

NONCODE 2016: an informative and valuable data source of long non-coding RNAs

(2015) Yi Zhao et al.   NUCLEIC ACIDS RESEARCH

Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer

(2015) Matthew Ruffalo et al.   PLoS Computational Biology

High-throughput characterization of protein-RNA interactions

(2014) K. B. Cook et al.   Briefings in Functional Genomics

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

(2014) S. Washietl et al.   GENOME RESEARCH

HeteSim: A General Framework for Relevance Measure in Heterogeneous Networks

(2014) Chuan Shi et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems

(2014) Yasunobu Okamura et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Methods for comprehensive experimental identification of RNA-protein interactions

(2014) Colleen A McHugh et al.   GENOME BIOLOGY

Computational prediction of associations between long non-coding RNAs and proteins

(2013) Qiongshi Lu et al.   BMC GENOMICS

Structure and function of long noncoding RNAs in epigenetic regulation

(2013) Tim R Mercer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

YeastNet v3: a public database of data-specific and integrated functional gene networks forSaccharomyces cerevisiae

(2013) Hanhae Kim et al.   NUCLEIC ACIDS RESEARCH

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

De novo prediction of RNA–protein interactions from sequence information

(2012) Ying Wang et al.   Molecular BioSystems

EZH2 inhibition as a therapeutic strategy for lymphoma with EZH2-activating mutations

(2012) Michael T. McCabe et al.   NATURE

HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer

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Predicting RNA-Protein Interactions Using Only Sequence Information

(2011) Usha K Muppirala et al.   BMC BIOINFORMATICS

DNA sequence polymorphisms within the bovine guanine nucleotide-binding protein Gs subunit alpha (Gsα)-encoding (GNAS) genomic imprinting domain are associated with performance traits

(2011) Klaudia M Sikora et al.   BMC GENETICS

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

(2011) P. Gaudet et al.   BRIEFINGS IN BIOINFORMATICS

RNA–protein interactions in human health and disease

(2011) Ahmad M. Khalil et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

GNAS Defects Identified by Stimulatory G Protein α-Subunit Signalling Studies in Platelets

(2008) Kathleen Freson et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM