Accurate prediction of RNA-binding protein residues with two discriminative structural descriptors

Predicting protein functions using incomplete hierarchical labels

(2015) Guoxian Yu et al.   BMC BIOINFORMATICS

Prediction of nucleic acid binding probability in proteins: a neighboring residue network based score

(2015) Z. Miao et al.   NUCLEIC ACIDS RESEARCH

A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs

(2015) Zhichao Miao et al.   PLoS Computational Biology

Multi-disciplinary methods to define RNA–protein interactions and regulatory networks

(2013) Manuel Ascano et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Identifying RNA-binding residues based on evolutionary conserved structural and energetic features

(2013) Yao Chi Chen et al.   NUCLEIC ACIDS RESEARCH

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art

(2012) Rasna R Walia et al.   BMC BIOINFORMATICS

Protein–RNA interactions: new genomic technologies and perspectives

(2012) Julian König et al.   NATURE REVIEWS GENETICS

Analysis and Prediction of RNA-Binding Residues Using Sequence, Evolutionary Conservation, and Predicted Secondary Structure and Solvent Accessibility

(2011) Tuo Zhang et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

The Role of RNA Sequence and Structure in RNA–Protein Interactions

(2011) Aditi Gupta et al.   JOURNAL OF MOLECULAR BIOLOGY

Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide–protein complexes

(2011) Jiro Kondo et al.   NUCLEIC ACIDS RESEARCH

From face to interface recognition: a differential geometric approach to distinguish DNA from RNA binding surfaces

(2011) Shula Shazman et al.   NUCLEIC ACIDS RESEARCH

Dissecting the protein–RNA interface: the role of protein surface shapes and RNA secondary structures in protein–RNA recognition

(2011) Junichi Iwakiri et al.   NUCLEIC ACIDS RESEARCH

Identification of protein-RNA interaction sites using the information of spatial adjacent residues

(2011) Wei Chen et al.   Proteome Science

Identification of RNA-binding sites in proteins by integrating various sequence information

(2010) Cui-cui Wang et al.   AMINO ACIDS

Prediction of protein–RNA binding sites by a random forest method with combined features

(2010) Zhi-Ping Liu et al.   BIOINFORMATICS

Predicting RNA-binding residues from evolutionary information and sequence conservation

(2010) Yu-Feng Huang et al.   BMC GENOMICS

Struct-NB: predicting protein-RNA binding sites using structural features

(2010) Fadi Towfic et al.   International Journal of Data Mining and Bioinformatics

AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties

(2010) Krishna Kumar Kandaswamy et al.   JOURNAL OF THEORETICAL BIOLOGY

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets

(2010) H. Zhao et al.   NUCLEIC ACIDS RESEARCH

NAPS: a residue-level nucleic acid-binding prediction server

(2010) Matthew B. Carson et al.   NUCLEIC ACIDS RESEARCH

Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature

(2010) Xin Ma et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein function annotation from sequence: prediction of residues interacting with RNA

(2009) R. V. Spriggs et al.   BIOINFORMATICS

Exploiting structural and topological information to improve prediction of RNA-protein binding sites

(2009) Stefan R Maetschke et al.   BMC BIOINFORMATICS

Optimal protein-RNA area, OPRA: A propensity-based method to identify RNA-binding sites on proteins

(2009) Laura Pérez-Cano et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests

(2009) Mile Šikić et al.   PLoS Computational Biology

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information

(2008) Cheng-Wei Cheng et al.   BMC BIOINFORMATICS

RISP: A web-based server for prediction of RNA-binding sites in proteins

(2008) Jing Tong et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

RNA-binding proteins and post-transcriptional gene regulation

(2008) Tina Glisovic et al.   FEBS LETTERS

Dissecting protein–RNA recognition sites

(2008) Ranjit Prasad Bahadur et al.   NUCLEIC ACIDS RESEARCH

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

RNA-binding proteins in human genetic disease

(2008) Kiven E. Lukong et al.   TRENDS IN GENETICS

Prediction of RNA binding sites in a protein using SVM and PSSM profile

(2007) Manish Kumar et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS