Dissecting the protein–RNA interface: the role of protein surface shapes and RNA secondary structures in protein–RNA recognition

The Role of RNA Sequence and Structure in RNA–Protein Interactions

(2011) Aditi Gupta et al.   JOURNAL OF MOLECULAR BIOLOGY

Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide–protein complexes

(2011) Jiro Kondo et al.   NUCLEIC ACIDS RESEARCH

Prediction of protein–RNA binding sites by a random forest method with combined features

(2010) Zhi-Ping Liu et al.   BIOINFORMATICS

The interwinding nature of protein–protein interfaces and its implication for protein complex formation

(2009) Kei Yura et al.   BIOINFORMATICS

The role of DNA shape in protein–DNA recognition

(2009) Remo Rohs et al.   NATURE

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

(2009) Debashish Ray et al.   NATURE BIOTECHNOLOGY

Cavities in protein–DNA and protein–RNA interfaces

(2009) Shrihari Sonavane et al.   NUCLEIC ACIDS RESEARCH

Optimal protein-RNA area, OPRA: A propensity-based method to identify RNA-binding sites on proteins

(2009) Laura Pérez-Cano et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Systematic Mapping of Genetic Interaction Networks

(2008) Scott J. Dixon et al.   Annual Review of Genetics

Prediction of Interacting Single-Stranded RNA Bases by Protein-Binding Patterns

(2008) Alexandra Shulman-Peleg et al.   JOURNAL OF MOLECULAR BIOLOGY

Dissecting protein–RNA recognition sites

(2008) Ranjit Prasad Bahadur et al.   NUCLEIC ACIDS RESEARCH

Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry

(2008) Yao Chi Chen et al.   NUCLEIC ACIDS RESEARCH

Classifying RNA-Binding Proteins Based on Electrostatic Properties

(2008) Shula Shazman et al.   PLoS Computational Biology