Integration of multi-omics data for prediction of phenotypic traits using random forest

Biological network inference using low order partial correlation

(2014) Yiming Zuo et al.   METHODS

Integrated network analysis and effective tools in plant systems biology

(2014) Atsushi Fukushima et al.   Frontiers in Plant Science

Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks

(2013) Julia Lasserre et al.   PLoS Computational Biology

Organ specificity and transcriptional control of metabolic routes revealed by expression QTL profiling of source--sink tissues in a segregating potato population

(2012) Bjorn Kloosterman et al.   BMC PLANT BIOLOGY

Untargeted Metabolic Quantitative Trait Loci Analyses Reveal a Relationship between Primary Metabolism and Potato Tuber Quality

(2012) N. Carreno-Quintero et al.   PLANT PHYSIOLOGY

Data integration and network reconstruction with ∼omics data using Random Forest regression in potato

(2011) Animesh Acharjee et al.   ANALYTICA CHIMICA ACTA

MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data

(2011) Y. M. Tikunov et al.   Metabolomics

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

From QTL to candidate gene: Genetical genomics of simple and complex traits in potato using a pooling strategy

(2010) Bjorn Kloosterman et al.   BMC GENOMICS

Data integration and analysis of biological networks

(2010) Tae Yong Kim et al.   CURRENT OPINION IN BIOTECHNOLOGY

Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach

(2010) Matthias Steinfath et al.   PLANT BIOTECHNOLOGY JOURNAL

Identification of alleles of carotenoid pathway genes important for zeaxanthin accumulation in potato tubers

(2010) Anne-Marie A. Wolters et al.   PLANT MOLECULAR BIOLOGY

Regularized estimation of large-scale gene association networks using graphical Gaussian models

(2009) Nicole Krämer et al.   BMC BIOINFORMATICS

Integrated omics approaches in plant systems biology

(2009) Atsushi Fukushima et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array

(2008) Bjorn Kloosterman et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Exploring and exploiting carotenoid accumulation in Dunaliella salina for cell-factory applications

(2008) Packo P. Lamers et al.   TRENDS IN BIOTECHNOLOGY

Plant systems biology comes of age

(2008) Joshua S. Yuan et al.   TRENDS IN PLANT SCIENCE