CompNet: a GUI based tool for comparison of multiple biological interaction networks

The Bub1–Plk1 kinase complex promotes spindle checkpoint signalling through Cdc20 phosphorylation

(2016) Luying Jia et al.   Nature Communications

Microbial community profiling shows dysbiosis in the lesional skin of Vitiligo subjects

(2016) Parul Ganju et al.   Scientific Reports

SOCS3 promotes inflammation and apoptosis via inhibiting JAK2/STAT3 signaling pathway in 3T3-L1 adipocyte

(2015) Zhenjiang Liu et al.   IMMUNOBIOLOGY

Gut Microbiomes of Indian Children of Varying Nutritional Status

(2014) Tarini Shankar Ghosh et al.   PLoS One

Population Specific Impact of Genetic Variants in KCNJ11 Gene to Type 2 Diabetes: A Case-Control and Meta-Analysis Study

(2014) Nagaraja M. Phani et al.   PLoS One

MIMO: an efficient tool for molecular interaction maps overlap

(2013) Pietro Lena et al.   BMC BIOINFORMATICS

Comparing methods for metabolic network analysis and an application to metabolic engineering

(2013) Namrata Tomar et al.   GENE

Community-Analyzer: A platform for visualizing and comparing microbial community structure across microbiomes

(2013) Bhusan K. Kuntal et al.   GENOMICS

Autoimmunity against INS-IGF2 Protein Expressed in Human Pancreatic Islets

(2013) Norio Kanatsuna et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Understanding the sequential activation of Type III and Type VI Secretion Systems in Salmonella typhimurium using Boolean modeling

(2013) Chandrani Das et al.   Gut Pathogens

IL-17 cytokines in immunity and inflammation

(2013) Wei Jin et al.   Emerging Microbes & Infections

Foxa2 may modulate hepatic apoptosis through the cIAP1 pathway

(2012) Kewei Wang et al.   CELLULAR SIGNALLING

Topological analysis and interactive visualization of biological networks and protein structures

(2012) Nadezhda T Doncheva et al.   Nature Protocols

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms

(2011) Y. Hao et al.   BIOINFORMATICS

Exact and Approximate Area-Proportional Circular Venn and Euler Diagrams

(2011) L. Wilkinson   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Express Path Analysis Identifies a Tyrosine Kinase Src-centric Network Regulating Divergent Host Responses toMycobacterium tuberculosisInfection

(2011) Ahmad Faisal Karim et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Dichotomy in Degree Correlation of Biological Networks

(2011) Dapeng Hao et al.   PLoS One

Using graph theory to analyze biological networks

(2011) Georgios A Pavlopoulos et al.   BioData Mining

MODEVO: exploring modularity and evolution of protein interaction networks

(2010) M. Wozniak et al.   BIOINFORMATICS

Finding local communities in protein networks

(2009) Konstantin Voevodski et al.   BMC BIOINFORMATICS

Prediction of conditional gene essentiality through graph theoretical analysis of genome-wide functional linkages

(2009) P. Manimaran et al.   Molecular BioSystems

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Survivin: Key Regulator of Mitosis and Apoptosis and Novel Target for Cancer Therapeutics

(2008) A. C. Mita et al.   CLINICAL CANCER RESEARCH

QNet: A Tool for Querying Protein Interaction Networks

(2008) Banu Dost et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Modelling and analysis of gene regulatory networks

(2008) Guy Karlebach et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH