A novel procedure on next generation sequencing data analysis using text mining algorithm

Biomarker identification from next-generation sequencing data for pathogen bacteria characterization and surveillance

(2015) Weizhong Zhao et al.   Biomarkers in Medicine

Exploiting topic modeling to boost metagenomic reads binning

(2015) Ruichang Zhang et al.   BMC BIOINFORMATICS

Topic modeling for cluster analysis of large biological and medical datasets

(2014) Weizhong Zhao et al.   BMC BIOINFORMATICS

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

(2014) S. N. Naccache et al.   GENOME RESEARCH

The Next-Generation Sequencing Revolution and Its Impact on Genomics

(2013) Daniel C. Koboldt et al.   CELL

Comparison of Typing Methods with a New Procedure Based on Sequence Characterization for Salmonella Serovar Prediction

(2013) M. L. Ranieri et al.   JOURNAL OF CLINICAL MICROBIOLOGY

On the Evolutionary History, Population Genetics and Diversity among Isolates of Salmonella Enteritidis PFGE Pattern JEGX01.0004

(2013) Marc W. Allard et al.   PLoS One

Investigating drug repositioning opportunities in FDA drug labels through topic modeling

(2012) Halil Bisgin et al.   BMC BIOINFORMATICS

High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach

(2012) Marc W Allard et al.   BMC GENOMICS

Probabilistic topic models

(2012) David M. Blei   COMMUNICATIONS OF THE ACM

Comparison ofdkgB-linked intergenic sequence ribotyping to DNA microarray hybridization for assigning serotype toSalmonella enterica

(2012) Jean Guard et al.   FEMS MICROBIOLOGY LETTERS

Prediction System for Rapid Identification of Salmonella Serotypes Based on Pulsed-Field Gel Electrophoresis Fingerprints

(2012) W. Zou et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Application of next-generation sequencing technologies in virology

(2012) A. D. Radford et al.   JOURNAL OF GENERAL VIROLOGY

Transforming clinical microbiology with bacterial genome sequencing

(2012) Xavier Didelot et al.   NATURE REVIEWS GENETICS

Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

(2012) Claudio U. Köser et al.   NEW ENGLAND JOURNAL OF MEDICINE

Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

(2012) Mark Achtman et al.   PLoS Pathogens

Multi-view methods for protein structure comparison using latent dirichlet allocation

(2011) S. Shivashankar et al.   BIOINFORMATICS

The impact of next-generation sequencing on genomics

(2011) Jun Zhang et al.   Journal of Genetics and Genomics

Identification of a Salmonellosis Outbreak by Means of Molecular Sequencing

(2011) E. Kurt Lienau et al.   NEW ENGLAND JOURNAL OF MEDICINE

Evaluation of Pulsed-Field Gel Electrophoresis Profiles for Identification of Salmonella Serotypes

(2010) W. Zou et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Metagenomic Pyrosequencing and Microbial Identification

(2009) J. F. Petrosino et al.   CLINICAL CHEMISTRY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Image retrieval

(2008) Ritendra Datta et al.   ACM COMPUTING SURVEYS