Evolution and diversity of transposable elements in fish genomes

Sox5 is involved in germ-cell regulation and sex determination in medaka following co-option of nested transposable elements

(2018) Manfred Schartl et al.   BMC BIOLOGY

Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

(2018) J. Auvinet et al.   BMC GENOMICS

Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

(2018) Zihao Yuan et al.   BMC GENOMICS

Mammalian transposable elements and their impacts on genome evolution

(2018) Roy N. Platt et al.   CHROMOSOME RESEARCH

Transposable elements: all mobile, all different, some stress responsive, some adaptive?

(2018) Sophie Lanciano et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data

(2018) Lily C. Hughes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FishTEDB: a collective database of transposable elements identified in the complete genomes of fish

(2018) Feng Shao et al.   Database-The Journal of Biological Databases and Curation

Genome Size Diversity and Its Impact on the Evolution of Land Plants

(2018) et al.   Genes

Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies

(2017) Venkat Talla et al.   Genome Biology and Evolution

Evolution and Diversity of Transposable Elements in Vertebrate Genomes

(2017) Cibele G. Sotero-Caio et al.   Genome Biology and Evolution

Dynamics of genome size evolution in birds and mammals

(2017) Aurélie Kapusta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sinocyclocheilus cavefish genome provides insights into cave adaptation

(2016) Junxing Yang et al.   BMC BIOLOGY

Evolutionary interaction between W/Y chromosome and transposable elements

(2016) Ewa B. Śliwińska et al.   GENETICA

Regulatory activities of transposable elements: from conflicts to benefits

(2016) Edward B. Chuong et al.   NATURE REVIEWS GENETICS

Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate

(2016) Hidenori Nishihara et al.   PLoS Genetics

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

(2016) Shubha Vij et al.   PLoS Genetics

The contribution of transposable elements to size variations between four teleost genomes

(2016) Bo Gao et al.   Mobile DNA

Transposable elements and early evolution of sex chromosomes in fish

(2015) Domitille Chalopin et al.   CHROMOSOME RESEARCH

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species

(2014) Anne-Marie Dion-Côté et al.   MOLECULAR BIOLOGY AND EVOLUTION

Large Numbers of Novel miRNAs Originate from DNA Transposons and Are Coincident with a Large Species Radiation in Bats

(2014) Roy N. Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

Metabolic 'engines' of flight drive genome size reduction in birds

(2014) N. A. Wright et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes

(2014) Xinxin You et al.   Nature Communications

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

The African coelacanth genome provides insights into tetrapod evolution

(2013) Chris T. Amemiya et al.   NATURE

An automated homology-based approach for identifying transposable elements

(2011) Ryan C Kennedy et al.   BMC BIOINFORMATICS

Dynamic interactions between transposable elements and their hosts

(2011) Henry L. Levin et al.   NATURE REVIEWS GENETICS

Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates

(2011) Keith R Oliver et al.   Mobile DNA

A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution

(2010) C. Biemont   GENETICS

The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important

(2010) E. M. Kvikstad et al.   GENOME RESEARCH

DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex

(2010) Sarah Schaack et al.   GENOME BIOLOGY

TEclass--a tool for automated classification of unknown eukaryotic transposable elements

(2009) G. Abrusan et al.   BIOINFORMATICS

MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes

(2009) M. Rho et al.   NUCLEIC ACIDS RESEARCH

Dynamics of transposable elements: towards a community ecology of the genome

(2009) Samuel Venner et al.   TRENDS IN GENETICS

A universal classification of eukaryotic transposable elements implemented in Repbase

(2008) Vladimir V. Kapitonov et al.   NATURE REVIEWS GENETICS

Genome size and wing parameters in passerine birds

(2008) C. B Andrews et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, and their relatives): A new perspective based on whole mitogenome sequences from 75 higher teleosts

(2007) Ryouka Kawahara et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION