Draft genome assembly of Tenualosa ilisha, Hilsa shad, provides resource for osmoregulation studies

Genome-wide association scan identifies new variants associated with a cognitive predictor of dyslexia

(2019) Alessandro Gialluisi et al.   Translational Psychiatry

Genetic population structure of a highly migratory Hilsa Shad, Tenualosa ilisha, in three river systems, inferred from four mitochondrial genes analysis

(2019) Vindhya Mohindra et al.   ENVIRONMENTAL BIOLOGY OF FISHES

BK potassium channel mRNA level changes in gills of Atlantic salmon after brackish water transfer

(2018) C.A. Loncoman et al.   AQUACULTURE

Comparative genome analysis of 52 fish species suggests differential associations of repetitive elements with their living aquatic environments

(2018) Zihao Yuan et al.   BMC GENOMICS

Physiological mechanism of osmoregulatory adaptation in anguillid eels

(2018) Quanquan Cao et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Alteration in branchial NKA and NKCC ion-transporter expression and ionocyte distribution in adult hilsa during up-river migration

(2018) Soumi Dutta et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

New approach for understanding genome variations in KEGG

(2018) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

claudin-10 isoform expression and cation selectivity change with salinity in salt-secreting epithelia of Fundulus heteroclitus

(2017) William S. Marshall et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

RNA-Seq analysis of salinity stress–responsive transcriptome in the liver of spotted sea bass (Lateolabrax maculatus)

(2017) Xiaoyan Zhang et al.   PLoS One

Toxicological perspective on the osmoregulation and ionoregulation physiology of major ions by freshwater animals: Teleost fish, crustacea, aquatic insects, and Mollusca

(2016) Michael B. Griffith   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Unraveling the Tissue-Specific Gene Signatures of Gilthead Sea Bream (Sparus aurata L.) after Hyper- and Hypo-Osmotic Challenges

(2016) Juan Antonio Martos-Sitcha et al.   PLoS One

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

(2016) Alvaro Martinez Barrio et al.   eLife

Application of a real-time PCR assay to detect BK potassium channel expression in samples from Atlantic salmon (Salmo salar) and Rainbow trout (Oncorhynchus mykiss) acclimated to freshwater#

(2015) CA Loncoman et al.   ARCHIVOS DE MEDICINA VETERINARIA

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

FIG4 regulates lysosome membrane homeostasis independent of phosphatase function

(2015) Rajnish Bharadwaj et al.   HUMAN MOLECULAR GENETICS

Physiological mechanisms used by fish to cope with salinity stress

(2015) D. Kultz   JOURNAL OF EXPERIMENTAL BIOLOGY

Expression and activity of V-H+-ATPase in gill and kidney of marbled eelAnguilla marmoratain response to salinity challenge

(2015) L. Li et al.   JOURNAL OF FISH BIOLOGY

Transcriptomic Analysis of Trout Gill Ionocytes in Fresh Water and Sea Water Using Laser Capture Microdissection Combined with Microarray Analysis

(2015) Isabelle Leguen et al.   PLoS One

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

(2015) Sean P. Gordon et al.   PLoS One

Differential transcriptomic analyses revealed genes and signaling pathways involved in iono-osmoregulation and cellular remodeling in the gills of euryhaline Mozambique tilapia, Oreochromis mossambicus

(2014) Siew Lam et al.   BMC GENOMICS

Claudin-6, -10d and -10e contribute to seawater acclimation in the euryhaline puffer fish Tetraodon nigroviridis

(2014) P. Bui et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

A promoter-level mammalian expression atlas

(2014)   NATURE

Small Changes in Gene Expression of Targeted Osmoregulatory Genes When Exposing Marine and Freshwater Threespine Stickleback (Gasterosteus aculeatus) to Abrupt Salinity Transfers

(2014) Annette Taugbøl et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

ABC transporters in fish species: a review

(2014) Marta Ferreira et al.   Frontiers in Physiology

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements

(2013) Guojun Yang   BMC BIOINFORMATICS

An intact connexin43 is required to enhance signaling and gene expression in osteoblast-like cells

(2013) Carla Hebert et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline

(2013) W. Iwasaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

The African coelacanth genome provides insights into tetrapod evolution

(2013) Chris T. Amemiya et al.   NATURE

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Claudins and the Modulation of Tight Junction Permeability

(2013) Dorothee Günzel et al.   PHYSIOLOGICAL REVIEWS

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Functional characterization and localization of a gill-specific claudin isoform in Atlantic salmon

(2011) M. B. Engelund et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Potassium excretion through ROMK potassium channel expressed in gill mitochondrion-rich cells of Mozambique tilapia

(2011) Fumiya Furukawa et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Differences in Salinity Tolerance and Gene Expression Between Two Populations of Atlantic Cod (Gadus morhua) in Response to Salinity Stress

(2011) P. F. Larsen et al.   BIOCHEMICAL GENETICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

The zebrafish genome encodes the largest vertebrate repertoire of functional aquaporins with dual paralogy and substrate specificities similar to mammals

(2010) Angèle Tingaud-Sequeira et al.   BMC EVOLUTIONARY BIOLOGY

Gill transcriptome response to changes in environmental calcium in the green spotted puffer fish

(2010) Patrícia IS Pinto et al.   BMC GENOMICS

Role of BK Channels in the Apoptotic Volume Decrease in Native Eel Intestinal Cells

(2010) Maria Giulia Lionetto et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Diverse functions for the semaphorin receptor PlexinD1 in development and disease

(2010) Carl M. Gay et al.   DEVELOPMENTAL BIOLOGY

Aquaporin expression dynamics in osmoregulatory tissues of Atlantic salmon during smoltification and seawater acclimation

(2010) C. K. Tipsmark et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Functional Genomics of Physiological Plasticity and Local Adaptation in Killifish

(2010) A. Whitehead et al.   JOURNAL OF HEREDITY

TEclass--a tool for automated classification of unknown eukaryotic transposable elements

(2009) G. Abrusan et al.   BIOINFORMATICS

Claudin-15 and -25b expression in the intestinal tract of Atlantic salmon in response to seawater acclimation, smoltification and hormone treatment

(2009) Christian K. Tipsmark et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Claudin-8 and -27 tight junction proteins in puffer fish Tetraodon nigroviridis acclimated to freshwater and seawater

(2009) Mazdak Bagherie-Lachidan et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

The NCBI BioSystems database

(2009) Lewis Y. Geer et al.   NUCLEIC ACIDS RESEARCH

Connexin 33 Impairs Gap Junction Functionality by Accelerating Connexin 43 Gap Junction Plaque Endocytosis

(2009) Diane Carette et al.   TRAFFIC

Structural and functional divergence of two fish aquaporin-1 water channels following teleost-specific gene duplication

(2008) Angèle Tingaud-Sequeira et al.   BMC EVOLUTIONARY BIOLOGY

Some insights into energy metabolism for osmoregulation in fish

(2008) Yung-Che Tseng et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Novel candidate genes identified in the brain during nociception in common carp (Cyprinus carpio) and rainbow trout (Oncorhynchus mykiss)

(2008) Siobhan C. Reilly et al.   NEUROSCIENCE LETTERS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH