DNA- and RNA-SIP Reveal Nitrospira spp. as Key Drivers of Nitrification in Groundwater-Fed Biofilters

Comammox Nitrospira are the dominant ammonia oxidizers in a mainstream low dissolved oxygen nitrification reactor

(2019) Paul Roots et al.   WATER RESEARCH

Metagenomic recovery of two distinct comammox Nitrospira from the terrestrial subsurface

(2019) Lianna Poghosyan et al.   ENVIRONMENTAL MICROBIOLOGY

Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata

(2019) K. Dimitri Kits et al.   Nature Communications

Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater-fed rapid sand filter communities

(2018) Susan Jane Fowler et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

(2018) Alejandro Palomo et al.   ISME Journal

Newly designed primer pair revealed dominant and diverse comammox amoA gene in full-scale wastewater treatment plants

(2018) Mingyuan Wang et al.   BIORESOURCE TECHNOLOGY

Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox)

(2018) Fei Xia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complete nitrification: insights into the ecophysiology of comammox Nitrospira

(2018) Hanna Koch et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Diversity of Iron Oxidizers in Groundwater-Fed Rapid Sand Filters: Evidence of Fe(II)-Dependent Growth by Curvibacter and Undibacterium spp.

(2018) Arda Gülay et al.   Frontiers in Microbiology

Transcriptional activity and diversity of comammox bacteria as a previously overlooked ammonia oxidizing prokaryote in full-scale wastewater treatment plants

(2018) Maosheng Zheng et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comammox—a newly discovered nitrification process in the terrestrial nitrogen cycle

(2017) Hang-Wei Hu et al.   JOURNAL OF SOILS AND SEDIMENTS

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle

(2017) K. Dimitri Kits et al.   NATURE

Density and distribution of nitrifying guilds in rapid sand filters for drinking water production: Dominance of Nitrospira spp.

(2017) Karolina Tatari et al.   WATER RESEARCH

Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira

(2017) Ryan P. Bartelme et al.   Frontiers in Microbiology

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

(2017) Petra Pjevac et al.   Frontiers in Microbiology

Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.

(2016) Alejandro Palomo et al.   ISME Journal

Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters

(2016) Arda Gülay et al.   ISME Journal

Depth investigation of rapid sand filters for drinking water production reveals strong stratification in nitrification biokinetic behavior

(2016) K. Tatari et al.   WATER RESEARCH

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Metagenomic Evidence for the Presence of Comammox Nitrospira -Like Bacteria in a Drinking Water System

(2015) Ameet J. Pinto et al.   mSphere

Internal Porosity of Mineral Coating Supports Microbial Activity in Rapid Sand Filters for Groundwater Treatment

(2014) Arda Gülay et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Crenarchaeal heterotrophy in salt marsh sediments

(2014) Lauren M Seyler et al.   ISME Journal

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

Effects of dynamic operating conditions on nitrification in biological rapid sand filters for drinking water treatment

(2014) Carson O. Lee et al.   WATER RESEARCH

Autotrophic Growth of Bacterial and Archaeal Ammonia Oxidizers in Freshwater Sediment Microcosms Incubated at Different Temperatures

(2013) Yucheng Wu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluation of autotrophic growth of ammonia-oxidizers associated with granular activated carbon used for drinking water purification by DNA-stable isotope probing

(2013) Jia Niu et al.   WATER RESEARCH

A novel bench-scale column assay to investigate site-specific nitrification biokinetics in biological rapid sand filters

(2013) K. Tatari et al.   WATER RESEARCH

Microbial Survey of a Full-Scale, Biologically Active Filter for Treatment of Drinking Water

(2012) Colin P. White et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria

(2012) Verona Vandieken et al.   ISME Journal

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi

(2012) Dimitry Y Sorokin et al.   ISME Journal

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment

(2011) Marc G. Dumont et al.   ENVIRONMENTAL MICROBIOLOGY

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms

(2011) Daniel T Verhamme et al.   ISME Journal

Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation

(2011) Alyson E Santoro et al.   ISME Journal

Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils

(2011) Li-Mei Zhang et al.   ISME Journal

Autotrophic growth of nitrifying community in an agricultural soil

(2011) Weiwei Xia et al.   ISME Journal

Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil

(2011) J. Pratscher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessment of nitrification in groundwater filters for drinking water production by qPCR and activity measurement

(2011) W.W.J.M. de Vet et al.   WATER RESEARCH

Improvement of RNA-SIP by pyrosequencing to identify putative 4-n-nonylphenol degraders in activated sludge

(2011) O. Zemb et al.   WATER RESEARCH

Identification of Ciliate Grazers of Autotrophic Bacteria in Ammonia-Oxidizing Activated Sludge by RNA Stable Isotope Probing

(2010) A. M. Moreno et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evidence for Different Contributions of Archaea and Bacteria to the Ammonia-Oxidizing Potential of Diverse Oregon Soils

(2010) A. E. Taylor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Autotrophic ammonia oxidation by soil thaumarchaea

(2010) L.-M. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ammonia-Oxidizing Bacteria and Archaea in Groundwater Treatment and Drinking Water Distribution Systems

(2009) P. W. J. J. van der Wielen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Differences of heterotrophic 13CO2 assimilation by Pseudomonas knackmussii strain B13 and Rhodococcus opacus 1CP and potential impact on biomarker stable isotope probing

(2008) Stefan Feisthauer et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular characterization of microbial populations in groundwater sources and sand filters for drinking water production

(2008) W.W.J.M. de Vet et al.   WATER RESEARCH