Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages
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Title
Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages
Authors
Keywords
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Journal
Viruses-Basel
Volume 11, Issue 12, Pages 1085
Publisher
MDPI AG
Online
2019-11-22
DOI
10.3390/v11121085
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Note: Only part of the references are listed.- Bacteriophages of the Human Gut: The “Known Unknown” of the Microbiome
- (2019) Andrey N. Shkoporov et al. Cell Host & Microbe
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- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
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- Ubiquitous Carbohydrate Binding Modules Decorate 936 Lactococcal Siphophage Virions
- (2019) Stephen Hayes et al. Viruses-Basel
- Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
- (2019) Robert A. Edwards et al. Nature Microbiology
- A Phage Protein Aids Bacterial Symbionts in Eukaryote Immune Evasion
- (2019) Martin T. Jahn et al. Cell Host & Microbe
- Alterations in Enteric Virome Are Associated With Colorectal Cancer and Survival Outcomes
- (2018) Geicho Nakatsu et al. GASTROENTEROLOGY
- Classification of β-hairpin repeat proteins
- (2018) Daniel B. Roche et al. JOURNAL OF STRUCTURAL BIOLOGY
- Molecular and Evolutionary Determinants of Bacteriophage Host Range
- (2018) Patrick A. de Jonge et al. TRENDS IN MICROBIOLOGY
- Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut
- (2018) Emma Guerin et al. Cell Host & Microbe
- ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis
- (2018) Andrey N. Shkoporov et al. Nature Communications
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets
- (2017) Xiaofan Zhou et al. MOLECULAR BIOLOGY AND EVOLUTION
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children
- (2017) Guoyan Zhao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Clustal Omega for making accurate alignments of many protein sequences
- (2017) Fabian Sievers et al. PROTEIN SCIENCE
- Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fiber Protein Gp34
- (2017) Meritxell Granell et al. Viruses-Basel
- The Human Gut Phage Community and Its Implications for Health and Disease
- (2017) Pilar Manrique et al. Viruses-Basel
- The Type IX Secretion System (T9SS): Highlights and Recent Insights into Its Structure and Function
- (2017) Anna M. Lasica et al. Frontiers in Cellular and Infection Microbiology
- Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut
- (2017) Natalya Yutin et al. Nature Microbiology
- Uncovering Earth’s virome
- (2016) David Paez-Espino et al. NATURE
- Healthy human gut phageome
- (2016) Pilar Manrique et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins
- (2016) Erez Persi et al. Nature Communications
- Viruses as Winners in the Game of Life
- (2016) Ana Georgina Cobián Güemes et al. Annual Review of Virology
- Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
- (2015) Jason M. Norman et al. CELL
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
- (2015) Alejandro Reyes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tandem-repeat protein domains across the tree of life
- (2015) Kristin K. Jernigan et al. PeerJ
- VirSorter: mining viral signal from microbial genomic data
- (2015) Simon Roux et al. PeerJ
- NbClust: AnRPackage for Determining the Relevant Number of Clusters in a Data Set
- (2015) Malika Charrad et al. Journal of Statistical Software
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models
- (2014) Travis J Wheeler et al. BMC BIOINFORMATICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes
- (2014) Johan Larsbrink et al. NATURE
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
- (2014) Bas E. Dutilh et al. Nature Communications
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- PATRIC, the bacterial bioinformatics database and analysis resource
- (2013) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- Bacteriophage adhering to mucus provide a non-host-derived immunity
- (2013) J. J. Barr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers
- (2012) C. Garcia-Doval et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Easyfig: a genome comparison visualizer
- (2011) M. J. Sullivan et al. BIOINFORMATICS
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Mining metagenomic data for novel domains: BACON, a new carbohydrate-binding module
- (2010) Luciane V. Mello et al. FEBS LETTERS
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- Characterization of the relationship between integrase, excisionase and antirepressor activities associated with a superinfecting Shiga toxin encoding bacteriophage
- (2010) P. C. M. Fogg et al. NUCLEIC ACIDS RESEARCH
- Structure of the bacteriophage T4 long tail fiber receptor-binding tip
- (2010) S. G. Bartual et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes
- (2008) G. Lima-Mendez et al. MOLECULAR BIOLOGY AND EVOLUTION
- Crystal structure ofEscherichia coliphage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related
- (2008) Stefanie Barbirz et al. MOLECULAR MICROBIOLOGY
- NCBI BLAST: a better web interface
- (2008) M. Johnson et al. NUCLEIC ACIDS RESEARCH
- An Intersubunit Active Site between Supercoiled Parallel β Helices in the Trimeric Tailspike Endorhamnosidase of Shigella flexneri Phage Sf6
- (2008) Jürgen J. Müller et al. STRUCTURE
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