Whole-genome de novo sequencing, combined with RNA-Seq analysis, reveals unique genome and physiological features of the amylolytic yeast Saccharomycopsis fibuligera and its interspecies hybrid

The Post-genomic Era of Trichoderma reesei : What's Next?

(2016) Vijai Kumar Gupta et al.   TRENDS IN BIOTECHNOLOGY

Overexpression of native Saccharomyces cerevisiae ER-to-Golgi SNARE genes increased heterologous cellulase secretion

(2015) John Henry D. Van Zyl et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Consolidated bioprocessing of starchy substrates into ethanol by industrialSaccharomyces cerevisiaestrains secreting fungal amylases

(2015) Lorenzo Favaro et al.   BIOTECHNOLOGY AND BIOENGINEERING

Mitochondrial genome evolution in yeasts: an all-encompassing view

(2015) Kelle C. Freel et al.   FEMS YEAST RESEARCH

Validation of a predictive model for the growth of chalk yeasts on bread

(2015) Anaïs Burgain et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Expression optimization and biochemical properties of two glycosyl hydrolase family 3 beta-glucosidases

(2015) Yuanyuan Ma et al.   JOURNAL OF BIOTECHNOLOGY

Direct ethanol production from starch using a natural isolate, Scheffersomyces shehatae: Toward consolidated bioprocessing

(2015) Ayumi Tanimura et al.   Scientific Reports

Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology

(2015) Hongzhi Cao et al.   GigaScience

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Two novel Saccharomycopsis species isolated from black olive brines and a tropical plant. Description of Saccharomycopsis olivae f. a., sp. nov. and Saccharomycopsis guyanensis f. a., sp. nov. Reassignment of Candida amapae to Saccharomycopsis amapae f. a., comb. nov., Candida lassenensis to Saccharomycopsis lassenensis f. a., comb. nov. and Arthroascus babjevae to Saccharomycopsis babjevae f. a., comb. nov.

(2014) N. Jacques et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mycoflora dynamics analysis of Korean traditional wheat-based nuruk

(2014) Jyotiranjan Bal et al.   JOURNAL OF MICROBIOLOGY

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm

(2014) Alexandre Lomsadze et al.   NUCLEIC ACIDS RESEARCH

SynChro: A Fast and Easy Tool to Reconstruct and Visualize Synteny Blocks along Eukaryotic Chromosomes

(2014) Guénola Drillon et al.   PLoS One

Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locusSaccharomyces cerevisiaesystem

(2014) Sara J. Hanson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κB

(2014) Yasar Luqman Ahmed et al.   PLOS BIOLOGY

Recalcitrant polysaccharide degradation by novel oxidative biocatalysts

(2013) Maria Dimarogona et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

TCC: an R package for comparing tag count data with robust normalization strategies

(2013) Jianqiang Sun et al.   BMC BIOINFORMATICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Saitoella coloradoensis sp. nov., a new species of the Ascomycota, subphylum Taphrinomycotina

(2012) Cletus P. Kurtzman et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Telomeres: The beginnings and ends of eukaryotic chromosomes

(2012) Virginia A. Zakian   EXPERIMENTAL CELL RESEARCH

Complex microbiota of a Chinese “Fen” liquor fermentation starter (Fen-Daqu), revealed by culture-dependent and culture-independent methods

(2012) Xiao-Wei Zheng et al.   FOOD MICROBIOLOGY

Fungi associated with the traditional starter cultures used for rice wine in Korea

(2012) Siyoung Yang et al.   Journal of the Korean Society for Applied Biological Chemistry

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Fermentation of cellobiose to ethanol by industrial Saccharomyces strains carrying the β-glucosidase gene (BGL1) from Saccharomycopsis fibuligera

(2011) Leontina Gurgu et al.   BIORESOURCE TECHNOLOGY

Development of an industrial ethanol-producing yeast strain for efficient utilization of cellobiose

(2011) Zhong-peng Guo et al.   ENZYME AND MICROBIAL TECHNOLOGY

Identification and characterization of yeasts causing chalk mould defects on par-baked bread

(2011) N. Deschuyffeleer et al.   FOOD MICROBIOLOGY

Trehalose accumulation from cassava starch and release by a highly thermosensitive and permeable mutant of Saccharomycopsis fibuligera

(2011) Dong-Sheng Wang et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

SyMAP v3.4: a turnkey synteny system with application to plant genomes

(2011) Carol Soderlund et al.   NUCLEIC ACIDS RESEARCH

Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions

(2011) Lei Chen et al.   PLANTA

Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents

(2011) J. L. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Surface display of acid protease on the cells of Yarrowia lipolytica for milk clotting

(2010) Xin-Jun Yu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biochemical characterization of a glucoamylase from Saccharomycopsis fibuligera R64

(2010) Dessy Natalia et al.   BIOLOGIA

Chromosomal G + C Content Evolution in Yeasts: Systematic Interspecies Differences, and GC-Poor Troughs at Centromeres

(2010) Denise B. Lynch et al.   Genome Biology and Evolution

Yeast evolutionary genomics

(2010) Bernard Dujon   NATURE REVIEWS GENETICS

Recent Advances in Microbial Raw Starch Degrading Enzymes

(2009) Haiyan Sun et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Saccharomycopsis fibuligera and its applications in biotechnology

(2009) Zhenming Chi et al.   BIOTECHNOLOGY ADVANCES

Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid

(2009) Y. Nakao et al.   DNA RESEARCH

A Screen for Spore Wall Permeability Mutants Identifies a Secreted Protease Required for Proper Spore Wall Assembly

(2009) Yasuyuki Suda et al.   PLoS One

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

Microbial diversity of traditional Vietnamese alcohol fermentation starters (banh men) as determined by PCR-mediated DGGE

(2008) Vu Nguyen Thanh et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Optimized amylolytic enzymes production in Saccharomycopsis fibuligera DSM-70554

(2007) C.F. González et al.   ENZYME AND MICROBIAL TECHNOLOGY