- Home
- Publications
- Publication Search
- Publication Details
Title
High-quality genome (re)assembly using chromosomal contact data
Authors
Keywords
-
Journal
Nature Communications
Volume 5, Issue 1, Pages -
Publisher
Springer Nature
Online
2014-12-17
DOI
10.1038/ncomms6695
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Filling annotation gaps in yeast genomes using genome-wide contact maps
- (2014) Hervé Marie-Nelly et al. BIOINFORMATICS
- Reconstructing complex regions of genomes using long-read sequencing technology
- (2014) J. Huddleston et al. GENOME RESEARCH
- From a melt of rings to chromosome territories: the role of topological constraints in genome folding
- (2014) Jonathan D Halverson et al. REPORTS ON PROGRESS IN PHYSICS
- High-throughput genome scaffolding from in vivo DNA interaction frequency
- (2013) Noam Kaplan et al. NATURE BIOTECHNOLOGY
- Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
- (2013) Joshua N Burton et al. NATURE BIOTECHNOLOGY
- Sequence assembly demystified
- (2013) Niranjan Nagarajan et al. NATURE REVIEWS GENETICS
- A set of genetically divergedSaccharomyces cerevisiaestrains with markerless deletions of multiple auxotrophic genes
- (2013) Hélène Louvel et al. YEAST
- Genetic Mapping of Specific Interactions between Aedes aegypti Mosquitoes and Dengue Viruses
- (2013) Thanyalak Fansiri et al. PLoS Genetics
- Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
- (2013) Keith R Bradnam et al. GigaScience
- Normalization of a chromosomal contact map
- (2012) Axel Cournac et al. BMC GENOMICS
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus
- (2012) Hua Wong et al. CURRENT BIOLOGY
- Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
- (2012) H. Tjong et al. GENOME RESEARCH
- 3C-based technologies to study the shape of the genome
- (2012) Wouter de Laat et al. METHODS
- Genome interpretation and assembly—recent progress and next steps
- (2012) H. Craig Mak NATURE BIOTECHNOLOGY
- Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)
- (2012) Yang Dong et al. NATURE BIOTECHNOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Oncogene-mediated alterations in chromatin conformation
- (2012) D. S. Rickman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Complexity of chromatin folding is captured by the strings and binders switch model
- (2012) M. Barbieri et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GAGE: A critical evaluation of genome assemblies and assembly algorithms
- (2011) S. L. Salzberg et al. GENOME RESEARCH
- Special issue: Trichoderma - from Basic Biology to Biotechnology
- (2011) G. E. Harman et al. MICROBIOLOGY-SGM
- Assessing the complex architecture of polygenic traits in diverged yeast populations
- (2011) FRANCISCO A. CUBILLOS et al. MOLECULAR ECOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Detection of structural variants and indels within exome data
- (2011) Emre Karakoc et al. NATURE METHODS
- Genome structural variation discovery and genotyping
- (2011) Can Alkan et al. NATURE REVIEWS GENETICS
- PyCUDA and PyOpenCL: A scripting-based approach to GPU run-time code generation
- (2011) Andreas Klöckner et al. PARALLEL COMPUTING
- A three-dimensional model of the yeast genome
- (2010) Zhijun Duan et al. NATURE
- Limitations of next-generation genome sequence assembly
- (2010) Can Alkan et al. NATURE METHODS
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery
- (2009) P. Oza et al. GENES & DEVELOPMENT
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
- (2008) Diego Martinez et al. NATURE BIOTECHNOLOGY
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started