Genome‐wide analysis of coding and non‐coding RNA reveals a conserved miR164‐ NAC regulatory pathway for fruit ripening

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

(2018) Sarah M. Pilkington et al.   BMC GENOMICS

MicroRNA1917 targets CTR4 splice variants to regulate ethylene responses in tomato

(2018) Yanling Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

EIN3-LIKE1, MYB1, and ETHYLENE RESPONSE FACTOR3 act in a regulatory loop that synergistically modulates ethylene biosynthesis and anthocyanin accumulation

(2018) Jian-Ping An et al.   PLANT PHYSIOLOGY

A Single-Nucleotide Polymorphism in the Promoter of a Hairpin RNA Contributes to Alternaria alternata Leaf Spot Resistance in Apple (Malus × domestica)

(2018) Qiulei Zhang et al.   PLANT CELL

EjNAC3 transcriptionally regulates chilling-induced lignification of loquat fruit via physical interaction with an atypical CAD-like gene

(2017) Hang Ge et al.   JOURNAL OF EXPERIMENTAL BOTANY

Citrus CitNAC62 cooperates with CitWRKY1 to participate in citric acid degradation via up-regulation of CitAco3

(2017) Shao-jia Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

The ‘how’ and ‘where’ of plant microRNAs

(2017) Yu Yu et al.   NEW PHYTOLOGIST

The Jasmonate-Activated Transcription Factor MdMYC2 Regulates ETHYLENE RESPONSE FACTOR and Ethylene Biosynthetic Genes to Promote Ethylene Biosynthesis during Apple Fruit Ripening

(2017) Tong Li et al.   PLANT CELL

microRNAs involved in auxin signalling modulate male sterility under high-temperature stress in cotton (Gossypium hirsutum )

(2017) Yuanhao Ding et al.   PLANT JOURNAL

Araport11: a complete reannotation of theArabidopsis thalianareference genome

(2017) Chia-Yi Cheng et al.   PLANT JOURNAL

Short tandem target mimic rice lines uncover functions of miRNAs in regulating important agronomic traits

(2017) Hui Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNAs: Big Impact on Plant Development

(2017) Marco D’Ario et al.   TRENDS IN PLANT SCIENCE

An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164

(2016) Myoung-Hoon Lee et al.   NEW PHYTOLOGIST

A mechanistic model to describe the effects of time, temperature and exogenous ethylene levels on softening of kiwifruit

(2016) Maarten L.A.T.M. Hertog et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening

(2016) Dario A. Breitel et al.   PLoS Genetics

Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing

(2015) Fangcheng Bi et al.   BMC GENOMICS

The Zinc Finger Transcription FactorSlZFP2Negatively Regulates Abscisic Acid Biosynthesis and Fruit Ripening in Tomato

(2015) Lin Weng et al.   PLANT PHYSIOLOGY

Natural Variation in Monoterpene Synthesis in Kiwifruit: Transcriptional Regulation of Terpene Synthases by NAC and ETHYLENE-INSENSITIVE3-Like Transcription Factors

(2015) Niels J. Nieuwenhuizen et al.   PLANT PHYSIOLOGY

EIN3 and ORE1 Accelerate Degreening during Ethylene-Mediated Leaf Senescence by Directly Activating Chlorophyll Catabolic Genes in Arabidopsis

(2015) Kai Qiu et al.   PLoS Genetics

Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening

(2015) Weiwei Chen et al.   Scientific Reports

Activator- and repressor-type MYB transcription factors are involved in chilling injury induced flesh lignification in loquat via their interactions with the phenylpropanoid pathway

(2014) Qian Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice

(2014) Yujie Fang et al.   JOURNAL OF EXPERIMENTAL BOTANY

SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice

(2014) Q. Lv et al.   PLANT CELL

Analysis of Complementarity Requirements for Plant MicroRNA Targeting Using a Nicotiana benthamiana Quantitative Transient Assay

(2014) Q. Liu et al.   PLANT CELL

A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons

(2014) T. Akagi et al.   SCIENCE

Fruit Development and Ripening

(2013) Graham B. Seymour et al.   Annual Review of Plant Biology

The target gene of tae-miR164, a novel NAC transcription factor from the NAM subfamily, negatively regulates resistance of wheat to stripe rust

(2013) Hao Feng et al.   MOLECULAR PLANT PATHOLOGY

ETHYLENE-INSENSITIVE3 Is a Senescence-Associated Gene That Accelerates Age-Dependent Leaf Senescence by Directly Repressing miR164 Transcription in Arabidopsis

(2013) Z. Li et al.   PLANT CELL

The miR172 target TOE3 represses AGAMOUS expression during Arabidopsis floral patterning

(2013) Jae-Hoon Jung et al.   PLANT SCIENCE

Identification of miRNAs and Their Target Genes in Peach (Prunus persica L.) Using High-Throughput Sequencing and Degradome Analysis

(2013) Xiaoyan Luo et al.   PLoS One

Draft genome of the kiwifruit Actinidia chinensis

(2013) Shengxiong Huang et al.   Nature Communications

Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

(2012) Jinhua Zuo et al.   BMC GENOMICS

The genome of the pear (Pyrus bretschneideri Rehd.)

(2012) J. Wu et al.   GENOME RESEARCH

Molecular characterization of banana NAC transcription factors and their interactions with ethylene signalling component EIL during fruit ripening

(2012) Wei Shan et al.   JOURNAL OF EXPERIMENTAL BOTANY

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing

(2012) Leighton Folkes et al.   NUCLEIC ACIDS RESEARCH

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Dissecting the role of climacteric ethylene in kiwifruit (Actinidia chinensis) ripening using a 1-aminocyclopropane-1-carboxylic acid oxidase knockdown line

(2011) Ross G. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional and post-transcriptional regulation of a NAC1 transcription factor in Medicago truncatula roots

(2011) Katrien D’haeseleer et al.   NEW PHYTOLOGIST

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Plant noncoding RNA gene discovery by "single-genome comparative genomics"

(2011) C.-J. Chen et al.   RNA

Regulatory Mechanisms of Textural Changes in Ripening Fruits

(2010) Xian Li et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Global Analysis of Direct Targets of Secondary Wall NAC Master Switches in Arabidopsis

(2010) Ruiqin Zhong et al.   Molecular Plant

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Kiwifruit EIL and ERF Genes Involved in Regulating Fruit Ripening

(2010) X.-r. Yin et al.   PLANT PHYSIOLOGY

Control of cell proliferation in Arabidopsis thaliana by microRNA miR396

(2009) R. E. Rodriguez et al.   DEVELOPMENT

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

miR319a targeting ofTCP4is critical for petal growth and development inArabidopsis

(2009) Anwesha Nag et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trifurcate Feed-Forward Regulation of Age-Dependent Cell Death Involving miR164 in Arabidopsis

(2009) J. H. Kim et al.   SCIENCE

Ethylene-induced modulation of genes associated with the ethylene signalling pathway in ripening kiwifruit

(2008) X.-r. Yin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Interplay of miR164,CUP-SHAPED COTYLEDONgenes andLATERAL SUPPRESSORcontrols axillary meristem formation inArabidopsis thaliana

(2008) Smita Raman et al.   PLANT JOURNAL

Analysis of xyloglucan endotransglucosylase/hydrolase (XTH) gene families in kiwifruit and apple

(2008) Ross G. Atkinson et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY