Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing

Transcriptome profiling of root microRNAs reveals novel insights into taproot thickening in radish (Raphanus sativus L.)

(2015) Rugang Yu et al.   BMC PLANT BIOLOGY

High-Throughput Sequencing Identifies Novel and Conserved Cucumber (Cucumis sativus L.) microRNAs in Response to Cucumber Green Mottle Mosaic Virus Infection

(2015) H. W. Liu et al.   PLoS One

Bioinformatic Identification and Expression Analysis of Banana MicroRNAs and Their Targets

(2015) Juan Chai et al.   PLoS One

Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening

(2015) Weiwei Chen et al.   Scientific Reports

Identification of miRNAs involved in pear fruit development and quality

(2014) Jun Wu et al.   BMC GENOMICS

Genome-wide comparison of microRNAs and their targeted transcripts among leaf, flower and fruit of sweet orange

(2014) Yuanlong Liu et al.   BMC GENOMICS

Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing

(2014) Nisha Lakhotia et al.   BMC PLANT BIOLOGY

‘Movers and shakers’ in the regulation of fruit ripening: a cross-dissection of climacteric versus non-climacteric fruit

(2014) Sam Cherian et al.   JOURNAL OF EXPERIMENTAL BOTANY

A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis

(2014) Céline Sorin et al.   NEW PHYTOLOGIST

System analysis of microRNAs in the development and aluminium stress responses of the maize root system

(2014) Xiangpei Kong et al.   PLANT BIOTECHNOLOGY JOURNAL

MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation

(2014) Chao Gao et al.   PLANT BIOTECHNOLOGY JOURNAL

A ripening-induced transcription factor MaBSD1 interacts with promoters of MaEXP1/2 from banana fruit

(2014) Liang-jie Ba et al.   PLANT CELL REPORTS

microRNA156-targeted SPL/SBP box transcription factors regulate tomato ovary and fruit development

(2014) Geraldo Felipe Ferreira e Silva et al.   PLANT JOURNAL

Plant microRNAs: Recent Advances and Future Challenges

(2014) Humberto J. Debat et al.   PLANT MOLECULAR BIOLOGY REPORTER

The Banana MaLBD (LATERAL ORGAN BOUNDARIES DOMAIN) Transcription Factors Regulate EXPANSIN Expression and Are Involved in Fruit Ripening

(2014) Liang-jie Ba et al.   PLANT MOLECULAR BIOLOGY REPORTER

A Contig-Based Strategy for the Genome-Wide Discovery of MicroRNAs without Complete Genome Resources

(2014) Jun-Zhi Wen et al.   PLoS One

Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion

(2014) Flávia Thiebaut et al.   PLoS One

Fruit Development and Ripening

(2013) Graham B. Seymour et al.   Annual Review of Plant Biology

Banana ethylene response factors are involved in fruit ripening through their interactions with ethylene biosynthesis genes

(2013) Yun-yi Xiao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula

(2013) Rodney P. Eyles et al.   PLANTA

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot

(2012) Zhihong Gao et al.   BMC GENOMICS

Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

(2012) Jinhua Zuo et al.   BMC GENOMICS

Molecular characterization of banana NAC transcription factors and their interactions with ethylene signalling component EIL during fruit ripening

(2012) Wei Shan et al.   JOURNAL OF EXPERIMENTAL BOTANY

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues

(2012) Shu-Jun Kou et al.   PLANT CELL REPORTS

Characterization of an AGAMOUS-like MADS Box Protein, a Probable Constituent of Flowering and Fruit Ripening Regulatory System in Banana

(2012) Swarup Roy Choudhury et al.   PLoS One

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis

(2011) Cintia G. Kawashima et al.   PLANT JOURNAL

Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions

(2011) Lei Chen et al.   PLANTA

Protein Phosphatase 2A Controls Ethylene Biosynthesis by Differentially Regulating the Turnover of ACC Synthase Isoforms

(2011) Kyle R. Skottke et al.   PLoS Genetics

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

(2010) Changnian Song et al.   BMC GENOMICS

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)

(2010) Chuan-Zhi Zhao et al.   BMC PLANT BIOLOGY

Over-expression of sly-miR156a in tomato results in multiple vegetative and reproductive trait alterations and partial phenocopy of thesftmutant

(2010) Xiaohui Zhang et al.   FEBS LETTERS

The regulation of MADS-box gene expression during ripening of banana and their regulatory interaction with ethylene

(2010) Tomer Elitzur et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Ripening of fleshy fruit: Molecular insight and the role of ethylene

(2009) Vishwas A. Bapat et al.   BIOTECHNOLOGY ADVANCES

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)

(2009) Deyou Qiu et al.   GENE

Ripening-associated ethylene biosynthesis in tomato fruit is autocatalytically and developmentally regulated

(2009) Naoki Yokotani et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

EIN3-like gene expression during fruit ripening of Cavendish banana (Musa acuminata cv. Grande naine)

(2008) Didier Mbéguié-A-Mbéguié et al.   PHYSIOLOGIA PLANTARUM

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Gene Regulation by Transcription Factors and MicroRNAs

(2008) O. Hobert   SCIENCE