Comparative Transcriptome Analysis of Cultivated and Wild Watermelon during Fruit Development

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

An integrated genetic map based on four mapping populations and quantitative trait loci associated with economically important traits in watermelon (Citrullus lanatus)

(2014) Yi Ren et al.   BMC PLANT BIOLOGY

Dynamic characteristics of sugar accumulation and related enzyme activities in sweet and non-sweet watermelon fruits

(2013) Jingan Liu et al.   ACTA PHYSIOLOGIAE PLANTARUM

Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit

(2013) Stefania Grassi et al.   BMC GENOMICS

Characterization and transcript profiling of the pectin methylesterase (PME) and pectin methylesterase inhibitor (PMEI) gene families in flax (Linum usitatissimum)

(2013) David Pinzón-Latorre et al.   BMC GENOMICS

Banana ethylene response factors are involved in fruit ripening through their interactions with ethylene biosynthesis genes

(2013) Yun-yi Xiao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

(2013) D. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

(2012) Shaogui Guo et al.   NATURE GENETICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

(2011) Shaogui Guo et al.   BMC GENOMICS

The glutamine synthetase gene family in Populus

(2011) Vanessa Castro-Rodríguez et al.   BMC PLANT BIOLOGY

Expression analysis of β-glucosidase genes that regulate abscisic acid homeostasis during watermelon (Citrullus lanatus) development and under stress conditions

(2011) Qian Li et al.   JOURNAL OF PLANT PHYSIOLOGY

Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation

(2011) Je Min Lee et al.   PLANT JOURNAL

Pectin methylesterase and its proteinaceous inhibitor: a review

(2010) Ruben P. Jolie et al.   CARBOHYDRATE RESEARCH

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

Enhancement of fruit shelf life by suppressing N-glycan processing enzymes

(2010) V. S. Meli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Sucrose accumulation in watermelon fruits: Genetic variation and biochemical analysis

(2009) Merav Yativ et al.   JOURNAL OF PLANT PHYSIOLOGY

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

(2009) J.-G. Joung et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Gene expression in developing watermelon fruit

(2008) W Patrick Wechter et al.   BMC GENOMICS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Molecular biology of ethylene during tomato fruit development and maturation

(2008) Beatriz Cara et al.   PLANT SCIENCE