Marine Proteobacteria metabolize glycolate via the β-hydroxyaspartate cycle

Extending the Compatibility of the SP3 Paramagnetic Bead Processing Approach for Proteomics

(2018) Sophie Moggridge et al.   JOURNAL OF PROTEOME RESEARCH

The Ocean Gene Atlas: exploring the biogeography of plankton genes online

(2018) Emilie Villar et al.   NUCLEIC ACIDS RESEARCH

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae

(2018) T. Ben Francis et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Recent advances in imine reductase-catalyzed reactions

(2017) Maike Lenz et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Crystallophore: a versatile lanthanide complex for protein crystallography combining nucleating effects, phasing properties, and luminescence

(2017) Sylvain Engilberge et al.   Chemical Science

Light-Enhanced Microbial Organic Carbon Yield

(2017) John R. Casey et al.   Frontiers in Microbiology

Versatile Vectors for Efficient Mutagenesis of Bradyrhizobium diazoefficiens and Other Alphaproteobacteria

(2016) Raphael Ledermann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria

(2016) Alexander Eiler et al.   ISME Journal

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

(2016) Hanno Teeling et al.   eLife

Ketimine reductase/CRYM catalyzes reductive alkylamination of α-keto acids, confirming its function as an imine reductase

(2015) André Hallen et al.   AMINO ACIDS

Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks

(2015) John A. Gerlt et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

The Crystal Structure of D-Threonine Aldolase from Alcaligenes xylosoxidans Provides Insight into a Metal Ion Assisted PLP-Dependent Mechanism

(2015) Michael K. Uhl et al.   PLoS One

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

An improved medium for the anaerobic growth of Paracoccus denitrificans Pd1222

(2014) Stefanie M. Hahnke et al.   Frontiers in Microbiology

eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows

(2013) Patrick Kiefer et al.   BIOINFORMATICS

Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium

(2012) Paul Carini et al.   ISME Journal

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

(2012) Timo Glatter et al.   JOURNAL OF PROTEOME RESEARCH

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

An improvedEscherichia colidonor strain for diparental mating

(2009) Sabrina Thoma et al.   FEMS MICROBIOLOGY LETTERS

iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences

(2009) R. Boyce et al.   NUCLEIC ACIDS RESEARCH

Unique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11

(2008) H. James Tripp et al.   ENVIRONMENTAL MICROBIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Glyoxylate carboligase lacks the canonical active site glutamate of thiamine-dependent enzymes

(2008) Alexander Kaplun et al.   Nature Chemical Biology