Portable sequencer in the fight against infectious disease

Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak

(2019) L. E. Kafetzopoulou et al.   SCIENCE

Single-molecule sequencing detection of N6-methyladenine in microbial reference materials

(2019) Alexa B. R. McIntyre et al.   Nature Communications

Sequencing of human genomes with nanopore technology

(2019) Rory Bowden et al.   Nature Communications

Ultra-deep, long-read nanopore sequencing of mock microbial community standards

(2019) Samuel M Nicholls et al.   GigaScience

Towards precision quantification of contamination in metagenomic sequencing experiments

(2019) M. S. Zinter et al.   Microbiome

Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene Variation within Diverse Plasmid and Chromosomal Contexts

(2019) Arun Gonzales Decano et al.   mSphere

Field diagnosis and genotyping of chikungunya virus using a dried reverse transcription loop-mediated isothermal amplification (LAMP) assay and MinION sequencing

(2019) Kyoko Hayashida et al.   PLoS Neglected Tropical Diseases

Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis

(2019) Adrian Viehweger et al.   GENOME RESEARCH

An innovative diagnostic technology for the codon mutation C580Y in kelch13 of Plasmodium falciparum with MinION nanopore sequencer

(2018) Kazuo Imai et al.   MALARIA JOURNAL

Nanopore sequencing of drug-resistance-associated genes in malaria parasites, Plasmodium falciparum

(2018) Lucky R. Runtuwene et al.   Scientific Reports

Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building

(2018) Aaron Pomerantz et al.   GigaScience

Past and Present Perspectives on β-Lactamases

(2018) Karen Bush   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Profiling DNA Methylation Based on Next-Generation Sequencing Approaches: New Insights and Clinical Applications

(2018) Daniela Barros-Silva et al.   Genes

Long-read sequencing uncovers a complex transcriptome topology in varicella zoster virus

(2018) István Prazsák et al.   BMC GENOMICS

Assessment of metagenomic Nanopore and Illumina sequencing for recovering whole genome sequences of chikungunya and dengue viruses directly from clinical samples

(2018) Liana E. Kafetzopoulou et al.   Eurosurveillance

Whole Genome Sequencing of Influenza A and B Viruses With the MinION Sequencer in the Clinical Setting: A Pilot Study

(2018) Kazuo Imai et al.   Frontiers in Microbiology

NanoAmpli-Seq: A workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform.

(2018) Szymon T Calus et al.   GigaScience

Nanopore sequencing meets epigenetics

(2017) Michael C Schatz   NATURE METHODS

Detecting DNA cytosine methylation using nanopore sequencing

(2017) Jared T Simpson et al.   NATURE METHODS

Mapping DNA methylation with high-throughput nanopore sequencing

(2017) Arthur C Rand et al.   NATURE METHODS

On site DNA barcoding by nanopore sequencing

(2017) Michele Menegon et al.   PLoS One

Development and preliminary evaluation of a multiplexed amplification and next generation sequencing method for viral hemorrhagic fever diagnostics

(2017) Annika Brinkmann et al.   PLoS Neglected Tropical Diseases

In Situ Field Sequencing and Life Detection in Remote (79°26′N) Canadian High Arctic Permafrost Ice Wedge Microbial Communities

(2017) J. Goordial et al.   Frontiers in Microbiology

Microbiota fingerprints lose individually identifying features over time

(2017) David Wilkins et al.   Microbiome

Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Nanopore DNA Sequencing and Genome Assembly on the International Space Station

(2017) Sarah L. Castro-Wallace et al.   Scientific Reports

The sequence of sequencers: The history of sequencing DNA

(2016) James M. Heather et al.   GENOMICS

Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing

(2016) Matthew Thoendel et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Real-time, portable genome sequencing for Ebola surveillance

(2016) Joshua Quick et al.   NATURE

A Worldwide Map ofPlasmodium falciparumK13-Propeller Polymorphisms

(2016) Didier Ménard et al.   NEW ENGLAND JOURNAL OF MEDICINE

Mobile real-time surveillance of Zika virus in Brazil

(2016) Nuno Rodrigues Faria et al.   Genome Medicine

What do we know about ribosomal RNA methylation in Escherichia coli?

(2015) O.V. Sergeeva et al.   BIOCHIMIE

Successful test launch for nanopore sequencing

(2015) Nicholas J Loman et al.   NATURE METHODS

A complete bacterial genome assembled de novo using only nanopore sequencing data

(2015) Nicholas J Loman et al.   NATURE METHODS

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

(2015) Alexander L. Greninger et al.   Genome Medicine

Direct Blood Dry LAMP: A Rapid, Stable, and Easy Diagnostic Tool for Human African Trypanosomiasis

(2015) Kyoko Hayashida et al.   PLoS Neglected Tropical Diseases

The Road to Metagenomics: From Microbiology to DNA Sequencing Technologies and Bioinformatics

(2015) Alejandra Escobar-Zepeda et al.   Frontiers in Genetics

MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island

(2014) Philip M Ashton et al.   NATURE BIOTECHNOLOGY

Epigenetics of Host–Pathogen Interactions: The Road Ahead and the Road Behind

(2012) Elena Gómez-Díaz et al.   PLoS Pathogens

The evolution of HIV-1 and the origin of AIDS

(2010) P. M. Sharp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Multiple Displacement Amplification for Malaria Parasite DNA

(2009) Y. Wang et al.   JOURNAL OF PARASITOLOGY

The Persistent Legacy of the 1918 Influenza Virus

(2009) David M. Morens et al.   NEW ENGLAND JOURNAL OF MEDICINE

Dating the Age of the SIV Lineages That Gave Rise to HIV-1 and HIV-2

(2009) Joel O. Wertheim et al.   PLoS Computational Biology