Development and preliminary evaluation of a multiplexed amplification and next generation sequencing method for viral hemorrhagic fever diagnostics

Real-time, portable genome sequencing for Ebola surveillance

(2016) Joshua Quick et al.   NATURE

Viral Hemorrhagic Fever Diagnostics

(2015) Lori D. Racsa et al.   CLINICAL INFECTIOUS DISEASES

Enhanced virome sequencing using targeted sequence capture

(2015) Todd N. Wylie et al.   GENOME RESEARCH

Temporal and spatial analysis of the 2014–2015 Ebola virus outbreak in West Africa

(2015) Miles W. Carroll et al.   NATURE

A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits

(2015) Timokratis Karamitros et al.   NUCLEIC ACIDS RESEARCH

Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis

(2015) Thomas Briese et al.   mBio

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

(2015) Alexander L. Greninger et al.   Genome Medicine

A Multiplex PCR/LDR Assay for the Simultaneous Identification of Category A Infectious Pathogens: Agents of Viral Hemorrhagic Fever and Variola Virus

(2015) Sanchita Das et al.   PLoS One

Poretools: a toolkit for analyzing nanopore sequence data

(2014) N. J. Loman et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Evaluation of a new NGS method based on a custom AmpliSeq library and Ion Torrent PGM sequencing for the fast detection of genetic variations in cardiomyopathies

(2014) Gilles Millat et al.   CLINICA CHIMICA ACTA

Antibody responses and viral load in patients with Crimean-Congo hemorrhagic fever: a comprehensive analysis during the early stages of the infection

(2014) Koray Ergunay et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Exploring the Potential of Next-Generation Sequencing in Detection of Respiratory Viruses

(2014) S. Prachayangprecha et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Comprehensive Multiplex One-Step Real-Time TaqMan qRT-PCR Assays for Detection and Quantification of Hemorrhagic Fever Viruses

(2014) Zheng Pang et al.   PLoS One

Single nucleotide polymorphism typing with massively parallel sequencing for human identification

(2013) Seung Bum Seo et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Sequence Analysis of the Human Virome in Febrile and Afebrile Children

(2012) Kristine M. Wylie et al.   PLoS One

Metagenomics and future perspectives in virus discovery

(2012) John L Mokili et al.   Current Opinion in Virology

Crimean–Congo hemorrhagic fever virus: new outbreaks, new discoveries

(2012) Onder Ergonul   Current Opinion in Virology

Molecular epidemiology of Crimean-Congo hemorrhagic fever virus in Turkey: Occurrence of local topotype

(2010) Etem Ozkaya et al.   VIRUS RESEARCH

The complete genome analysis of Crimean-Congo hemorrhagic fever virus isolated in Turkey

(2009) Aykut Özdarendeli et al.   VIRUS RESEARCH

Predicting the sensitivity and specificity of published real-time PCR assays

(2008) Gordon H Lemmon et al.   Annals of Clinical Microbiology and Antimicrobials