In silico prediction of potential miRNA‐disease association using an integrative bioinformatics approach based on kernel fusion

Gene Expression-Based Predictive Markers for Paclitaxel Treatment in ER+ and ER− Breast Cancer

(2019) Xiaowen Feng et al.   Frontiers in Genetics

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

(2018) Xing Chen et al.   PLoS Computational Biology

RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   RNA Biology

Large-scale prediction of microRNA-disease associations by combinatorial prioritization algorithm

(2017) Hua Yu et al.   Scientific Reports

LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   PLoS Computational Biology

NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning

(2016) Xing Chen et al.   PLoS Computational Biology

miR-151-3p Targets TWIST1 to Repress Migration of Human Breast Cancer Cells

(2016) Ting-Chih Yeh et al.   PLoS One

WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

(2016) Xing Chen et al.   Scientific Reports

Prediction of miRNA-disease associations with a vector space model

(2016) Claude Pasquier et al.   Scientific Reports

Prediction of potential disease-associated microRNAs based on random walk

(2015) Ping Xuan et al.   BIOINFORMATICS

ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks

(2015) Gianvito Pio et al.   BMC BIOINFORMATICS

RETRACTED ARTICLE: The microRNA-325 inhibits hepatocellular carcinoma progression by targeting high mobility group box 1

(2015) Huifen Li et al.   Diagnostic Pathology

Insights into the potential use of microRNAs as a novel class of biomarkers in esophageal cancer

(2015) J. Wan et al.   DISEASES OF THE ESOPHAGUS

Predictive genomics: A cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data

(2015) Edwin Wang et al.   SEMINARS IN CANCER BIOLOGY

RBMMMDA: predicting multiple types of disease-microRNA associations

(2015) Xing Chen et al.   Scientific Reports

Semi-Supervised Multi-View Learning for Gene Network Reconstruction

(2015) Michelangelo Ceci et al.   PLoS One

MiR-506 suppresses proliferation of hepatoma cells through targeting YAP mRNA 3′UTR

(2014) Yue Wang et al.   ACTA PHARMACOLOGICA SINICA

MicroRNAs in B-cell lymphomas: how a complex biology gets more complex

(2014) K Musilova et al.   LEUKEMIA

Prioritizing candidate disease miRNAs by integrating phenotype associations of multiple diseases with matched miRNA and mRNA expression profiles

(2014) Chaohan Xu et al.   Molecular BioSystems

miR-218 suppresses tumor growth and enhances the chemosensitivity of esophageal squamous cell carcinoma to cisplatin

(2014) HANG TIAN et al.   ONCOLOGY REPORTS

MicroRNA Profiles Discriminate among Colon Cancer Metastasis

(2014) Alessandra Drusco et al.   PLoS One

Semi-supervised learning for potential human microRNA-disease associations inference

(2014) Xing Chen et al.   Scientific Reports

Protein-driven inference of miRNA-disease associations

(2013) S. Mork et al.   BIOINFORMATICS

Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes

(2013) Hongbo Shi et al.   BMC Systems Biology

Colon and Rectal Cancer Survival by Tumor Location and Microsatellite Instability

(2013) Amanda I. Phipps et al.   DISEASES OF THE COLON & RECTUM

Diagnostic and treatment delay, quality of life and satisfaction with care in colorectal cancer patients: a study protocol

(2013) Salvador Pita-Fernández et al.   Health and Quality of Life Outcomes

“Seq-ing” Insights into the Epigenetics of Neuronal Gene Regulation

(2013) Francesca Telese et al.   NEURON

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

Salivary MicroRNAs as Promising Biomarkers for Detection of Esophageal Cancer

(2013) Zijun Xie et al.   PLoS One

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors

(2013) Ping Xuan et al.   PLoS One

Impact of microRNA regulation on variation in human gene expression

(2012) J. Lu et al.   GENOME RESEARCH

Overexpression of miR-92a correlates with tumor metastasis and poor prognosis in patients with colorectal cancer

(2012) Tong Zhou et al.   INTERNATIONAL JOURNAL OF COLORECTAL DISEASE

Dihydropyrimidine dehydrogenase (DPD) expression is negatively regulated by certain microRNAs in human lung tissues

(2012) Takeshi Hirota et al.   LUNG CANCER

RWRMDA: predicting novel human microRNA–disease associations

(2012) Xing Chen et al.   Molecular BioSystems

MicroRNA-98 and microRNA-214 post-transcriptionally regulate enhancer of zeste homolog 2 and inhibit migration and invasion in human esophageal squamous cell carcinoma

(2012) Sheng-Dong Huang et al.   Molecular Cancer

The Clinico-Pathologic Role of MicroRNAs miR-9 and miR-151-5p in Breast Cancer Metastasis

(2012) Jonathan Krell et al.   Molecular Diagnosis & Therapy

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Systematic Review and Meta-Analysis of the Relationship between EPHX1 Polymorphisms and Colorectal Cancer Risk

(2012) Fei Liu et al.   PLoS One

Overexpression of miR-142-5p and miR-155 in Gastric Mucosa-Associated Lymphoid Tissue (MALT) Lymphoma Resistant to Helicobacter pylori Eradication

(2012) Yoshimasa Saito et al.   PLoS One

Mutation Altering the miR-184 Seed Region Causes Familial Keratoconus with Cataract

(2011) Anne E. Hughes et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

Cancer computational biology

(2011) Zohar Yakhini et al.   BMC BIOINFORMATICS

MicroRNA regulation in mammalian adipogenesis

(2011) Josue M Romao et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target-Dysregulated Network: Case Study of Prostate Cancer

(2011) J. Xu et al.   MOLECULAR CANCER THERAPEUTICS

Prioritizing human cancer microRNAs based on genes’ functional consistency between microRNA and cancer

(2011) Xia Li et al.   NUCLEIC ACIDS RESEARCH

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

dbDEMC: a database of differentially expressed miRNAs in human cancers

(2010) Zhen Yang et al.   BMC GENOMICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

A novel mutation in the miR-128b gene reduces miRNA processing and leads to glucocorticoid resistance of MLL-AF4 Acute Lymphocytic Leukemia cells

(2010) Ai Kotani et al.   CELL CYCLE

Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss

(2009) Ángeles Mencía et al.   NATURE GENETICS

The noncoding RNA, miR-126, suppresses the growth of neoplastic cells by targeting phosphatidylinositol 3-kinase signaling and is frequently lost in colon cancers

(2008) Chunguang Guo et al.   GENES CHROMOSOMES & CANCER

The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1

(2008) Philip A. Gregory et al.   NATURE CELL BIOLOGY

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH