Prioritizing candidate disease miRNAs by integrating phenotype associations of multiple diseases with matched miRNA and mRNA expression profiles

Joint analysis of expression profiles from multiple cancers improves the identification of microRNA-gene interactions

(2013) X. Chen et al.   BIOINFORMATICS

Similarity-based methods for potential human microRNA-disease association prediction

(2013) Hailin Chen et al.   BMC Medical Genomics

Identifying dysfunctional miRNA-mRNA regulatory modules by inverse activation, cofunction, and high interconnection of target genes: A case study of glioblastoma

(2013) Y. Xiao et al.   NEURO-ONCOLOGY

Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions

(2013) Maarten van Iterson et al.   NUCLEIC ACIDS RESEARCH

RWRMDA: predicting novel human microRNA–disease associations

(2012) Xing Chen et al.   Molecular BioSystems

Prioritizing cancer-related key miRNA–target interactions by integrative genomics

(2012) Yun Xiao et al.   NUCLEIC ACIDS RESEARCH

Platelet microRNA-mRNA coexpression profiles correlate with platelet reactivity

(2011) S. Nagalla et al.   BLOOD

microRNA-Associated Progression Pathways and Potential Therapeutic Targets Identified by Integrated mRNA and microRNA Expression Profiling in Breast Cancer

(2011) F. M. Buffa et al.   CANCER RESEARCH

Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target-Dysregulated Network: Case Study of Prostate Cancer

(2011) J. Xu et al.   MOLECULAR CANCER THERAPEUTICS

The microRNA body map: dissecting microRNA function through integrative genomics

(2011) Pieter Mestdagh et al.   NUCLEIC ACIDS RESEARCH

Prioritizing human cancer microRNAs based on genes’ functional consistency between microRNA and cancer

(2011) Xia Li et al.   NUCLEIC ACIDS RESEARCH

An Integrated Analysis of miRNA and mRNA Expressions in Non-Small Cell Lung Cancers

(2011) Lina Ma et al.   PLoS One

TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs

(2010) Ming Lu et al.   BMC BIOINFORMATICS

dbDEMC: a database of differentially expressed miRNAs in human cancers

(2010) Zhen Yang et al.   BMC GENOMICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma

(2010) Huiqing Liu et al.   BMC Systems Biology

mRNA and microRNA Expression Profiles of the NCI-60 Integrated with Drug Activities

(2010) H. Liu et al.   MOLECULAR CANCER THERAPEUTICS

miRTarBase: a database curates experimentally validated microRNA–target interactions

(2010) Sheng-Da Hsu et al.   NUCLEIC ACIDS RESEARCH

Cancer as a metabolic disease

(2010) Thomas N Seyfried et al.   Nutrition & Metabolism

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

DIANA-microT web server: elucidating microRNA functions through target prediction

(2009) M. Maragkakis et al.   NUCLEIC ACIDS RESEARCH

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

(2009) J. Chen et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology term overlap as a measure of gene functional similarity

(2008) Meeta Mistry et al.   BMC BIOINFORMATICS

Network-based global inference of human disease genes

(2008) Xuebing Wu et al.   Molecular Systems Biology

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One