GingerRoot: A Novel DNA Transposon Encoding Integrase-Related Transposase in Plants and Animals

Duplication of host genes by transposable elements

(2018) Stefan Cerbin et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum

(2018) Dongyan Zhao et al.   NUCLEIC ACIDS RESEARCH

Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla

(2018) Robert VanBuren et al.   Nature Communications

Database resources of the National Center for Biotechnology Information

(2018) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

(2017) Shujun Ou et al.   PLANT PHYSIOLOGY

What makes up plant genomes: The vanishing line between transposable elements and genes

(2016) Dongyan Zhao et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The Small Nuclear Genomes ofSelaginellaAre Associated with a Low Rate of Genome Size Evolution

(2016) Anthony E. Baniaga et al.   Genome Biology and Evolution

A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta)

(2016) Matthew G. Johnson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Alternative Transposition Generates New Chimeric Genes and Segmental Duplications at the Maize p1 Locus

(2015) D. Wang et al.   GENETICS

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

The Bimodal Distribution of Genic GC Content Is Ancestral to Monocot Species

(2014) Yves Clément et al.   Genome Biology and Evolution

Widespread and frequent horizontal transfers of transposable elements in plants

(2014) M. El Baidouri et al.   GENOME RESEARCH

Selective Acquisition and Retention of Genomic Sequences by Pack-Mutator-Like Elements Based on Guanine-Cytosine Content and the Breadth of Expression

(2013) A. A. Ferguson et al.   PLANT PHYSIOLOGY

Generation of Tandem Direct Duplications by Reversed-Ends Transposition of Maize Ac Elements

(2013) Jianbo Zhang et al.   PLoS Genetics

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

(2012) Raquel S. Linheiro et al.   PLoS One

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition

(2011) N. Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies

(2011) Y.-W. Yuan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

(2011) J. A. Banks et al.   SCIENCE

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons

(2010) Weidong Bao et al.   Mobile DNA

New Superfamilies of Eukaryotic DNA Transposons and Their Internal Divisions

(2009) W. Bao et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Functional Role of Pack-MULEs in Rice Inferred from Purifying Selection and Expression Profile

(2009) K. Hanada et al.   PLANT CELL

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Selaginella and 400 Million Years of Separation

(2008) Jo Ann Banks   Annual Review of Plant Biology

Chromodomains direct integration of retrotransposons to heterochromatin

(2008) X. Gao et al.   GENOME RESEARCH

The GP(Y/F) Domain of TF1 Integrase Multimerizes when Present in a Fragment, and Substitutions in This Domain Reduce Enzymatic Activity of the Full-length Protein

(2008) Hirotaka Ebina et al.   JOURNAL OF BIOLOGICAL CHEMISTRY