Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

LncRNA expression profile and ceRNA analysis in tomato during flowering

(2019) Zhenchao Yang et al.   PLoS One

Systematic identification and analysis of heat‐stress‐responsive lncRNAs, circRNAs and miRNAs with associated co‐expression and ceRNA networks in cucumber ( Cucumis sativus L.)

(2019) Xueying He et al.   PHYSIOLOGIA PLANTARUM

Non-coding RNAs and transposable elements in plant genomes: emergence, regulatory mechanisms and roles in plant development and stress responses

(2019) Jinna Hou et al.   PLANTA

Strand-specific RNA-seq based identification and functional prediction of lncRNAs in response to melatonin and simulated drought stresses in cassava

(2019) Zehong Ding et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide analysis of differentially expressed profiles of mRNAs, lncRNAs and circRNAs during Cryptosporidium baileyi infection

(2018) Guan-Jing Ren et al.   BMC GENOMICS

Analyzing the interactions of mRNAs, miRNAs, lncRNAs and circRNAs to predict competing endogenous RNA networks in glioblastoma

(2018) Yang Yuan et al.   JOURNAL OF NEURO-ONCOLOGY

SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis

(2018) Ryoichi Araki et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-Wide Identification and Characterization of Long Non-Coding RNA in Wheat Roots in Response to Ca2+ Channel Blocker

(2018) Keshi Ma et al.   Frontiers in Plant Science

Identification and characterization of ncRNA-associated ceRNA networks in Arabidopsis leaf development

(2018) Xianwen Meng et al.   BMC GENOMICS

Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction

(2017) Xia Wang et al.   NATURE GENETICS

Integrative analysis of circRNAs acting as ceRNAs involved in ethylene pathway in tomato

(2017) Yunxiang Wang et al.   PHYSIOLOGIA PLANTARUM

Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis

(2017) Jiapei Yan et al.   PLANT CELL

Noncoding and coding transcriptome analysis reveals the regulation roles of long noncoding RNAs in fruit development of hot pepper (Capsicum annuum L.)

(2017) Lijun Ou et al.   PLANT GROWTH REGULATION

Conservation of microRNA-mediated regulatory networks in response to copper stress in grapevine

(2017) Xiangpeng Leng et al.   PLANT GROWTH REGULATION

Transcriptomic Analysis of Long Non-Coding RNAs and Coding Genes Uncovers a Complex Regulatory Network That Is Involved in Maize Seed Development

(2017) Ming Zhu et al.   Genes

Non-coding RNAs and Their Roles in Stress Response in Plants

(2017) Jingjing Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Toxicity responses of Cu and Cd: the involvement of miRNAs and the transcription factor SPL7

(2016) Heidi Gielen et al.   BMC PLANT BIOLOGY

Unique features of long non-coding RNA biogenesis and function

(2016) Jeffrey J. Quinn et al.   NATURE REVIEWS GENETICS

The copper microRNAs

(2016) Marinus Pilon   NEW PHYTOLOGIST

Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs

(2016) Qiupeng Zheng et al.   Nature Communications

A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain

(2016) Xin-Yuan Huang et al.   Nature Communications

Copper Delivery to Chloroplast Proteins and its Regulation

(2016) Guadalupe Aguirre et al.   Frontiers in Plant Science

Functional analysis of long intergenic non-coding RNAs in phosphate-starved rice using competing endogenous RNA network

(2016) Xi-Wen Xu et al.   Scientific Reports

Evaluating wild grapevine tolerance to copper toxicity

(2015) J. Cambrollé et al.   CHEMOSPHERE

Long non-coding RNAs and their functions in plants

(2015) Julia A Chekanova   CURRENT OPINION IN PLANT BIOLOGY

APF lncRNA regulates autophagy and myocardial infarction by targeting miR-188-3p

(2015) Kun Wang et al.   Nature Communications

CIRI: an efficient and unbiased algorithm for de novo circular RNA identification

(2015) Yuan Gao et al.   GENOME BIOLOGY

Comparative transcriptome analysis of grapevine in response to copper stress

(2015) Xiangpeng Leng et al.   Scientific Reports

Complementary Sequence-Mediated Exon Circularization

(2014) Xiao-Ou Zhang et al.   CELL

Soil Contamination in China: Current Status and Mitigation Strategies

(2014) Fang-Jie Zhao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

MicroRNA mediated regulation of metal toxicity in plants: present status and future perspectives

(2013) O. P. Gupta et al.   PLANT MOLECULAR BIOLOGY

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

COPT6 Is a Plasma Membrane Transporter That Functions in Copper Homeostasis inArabidopsisand Is a Novel Target ofSQUAMOSAPromoter-binding Protein-like 7

(2012) Ha-il Jung et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

PsRobot: a web-based plant small RNA meta-analysis toolbox

(2012) Hua-Jun Wu et al.   NUCLEIC ACIDS RESEARCH

YSL16 Is a Phloem-Localized Transporter of the Copper-Nicotianamine Complex That Is Responsible for Copper Distribution in Rice

(2012) L. Zheng et al.   PLANT CELL

Transcriptome Sequencing Identifies SPL7-Regulated Copper Acquisition Genes FRO4/FRO5 and the Copper Dependence of Iron Homeostasis in Arabidopsis

(2012) M. Bernal et al.   PLANT CELL

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

Overexpression of the betaine aldehyde dehydrogenase gene from Atriplex hortensis enhances salt tolerance in the transgenic trifoliate orange (Poncirus trifoliata L. Raf.)

(2011) Xing-Zheng Fu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)

(2011) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Oligopeptide Transporters: A Small Gene Family with a Diverse Group of Substrates and Functions?

(2011) Mark Lubkowitz   Molecular Plant

Genome-wide computational identification and manual annotation of human long noncoding RNA genes

(2010) H. Jia et al.   RNA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Ectopic expression of Arabidopsis ABC transporter MRP7 modifies cadmium root-to-shoot transport and accumulation

(2009) Sylwia Wojas et al.   ENVIRONMENTAL POLLUTION

Copper in plants: acquisition, transport and interactions

(2009) Inmaculada Yruela   FUNCTIONAL PLANT BIOLOGY

Copper homeostasis

(2009) Jason L. Burkhead et al.   NEW PHYTOLOGIST

SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis

(2009) H. Yamasaki et al.   PLANT CELL

MicroRNA-mediated Systemic Down-regulation of Copper Protein Expression in Response to Low Copper Availability inArabidopsis

(2008) Salah E. Abdel-Ghany et al.   JOURNAL OF BIOLOGICAL CHEMISTRY