Direct calculation of minimal cut sets involving a specific reaction knock-out

On the feasibility of growth-coupled product synthesis in microbial strains

(2015) Steffen Klamt et al.   METABOLIC ENGINEERING

Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks

(2014) Jon Pey et al.   BIOINFORMATICS

TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm

(2014) Jon Pey et al.   BIOINFORMATICS

A depth-first search algorithm to compute elementary flux modes by linear programming

(2014) Lake-Ee Quek et al.   BMC Systems Biology

Cyanobacterial biofuels: new insights and strain design strategies revealed by computational modeling

(2014) Philipp Erdrich et al.   Microbial Cell Factories

Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks

(2014) Axel von Kamp et al.   PLoS Computational Biology

Random sampling of elementary flux modes in large-scale metabolic networks

(2012) Daniel Machado et al.   BIOINFORMATICS

Minimal cut sets in a metabolic network are elementary modes in a dual network

(2011) Kathrin Ballerstein et al.   BIOINFORMATICS

Predicting selective drug targets in cancer through metabolic networks

(2011) O. Folger et al.   Molecular Systems Biology

Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase

(2011) Christian Frezza et al.   NATURE

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

(2011) Jan Schellenberger et al.   Nature Protocols

Exploring metabolic pathways in genome-scale networks via generating flux modes

(2010) A. Rezola et al.   BIOINFORMATICS

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

(2010) Jan Schellenberger et al.   BMC BIOINFORMATICS

Computing the shortest elementary flux modes in genome-scale metabolic networks

(2009) Luis F. de Figueiredo et al.   BIOINFORMATICS

Genome-scale gene/reaction essentiality and synthetic lethality analysis

(2009) Patrick F Suthers et al.   Molecular Systems Biology

Large-scale computation of elementary flux modes with bit pattern trees

(2008) Marco Terzer et al.   BIOINFORMATICS

A new constraint-based description of the steady-state flux cone of metabolic networks

(2008) Abdelhalim Larhlimi et al.   DISCRETE APPLIED MATHEMATICS