Cyanobacterial biofuels: new insights and strain design strategies revealed by computational modeling

Enumeration of Smallest Intervention Strategies in Genome-Scale Metabolic Networks

(2014) Axel von Kamp et al.   PLoS Computational Biology

Computational evaluation ofSynechococcussp. PCC 7002 metabolism for chemical production

(2013) Trang T. Vu et al.   Biotechnology Journal

Engineering cyanobacteria for photosynthetic production of 3-hydroxybutyrate directly from CO2

(2013) Bo Wang et al.   METABOLIC ENGINEERING

Metabolic modeling for multi-objective optimization of ethanol production in a Synechocystis mutant

(2013) Tirthankar Sengupta et al.   PHOTOSYNTHESIS RESEARCH

Flux Balance Analysis of Cyanobacterial Metabolism: The Metabolic Network of Synechocystis sp. PCC 6803

(2013) Henning Knoop et al.   PLoS Computational Biology

Physiological tolerance and stoichiometric potential of cyanobacteria for hydrocarbon fuel production

(2012) Jari Kämäräinen et al.   JOURNAL OF BIOTECHNOLOGY

Reconstruction and Comparison of the Metabolic Potential of Cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC 6803

(2012) Rajib Saha et al.   PLoS One

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis

(2012) J. Nogales et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward systems metabolic engineering in cyanobacteria

(2012) Juan Nogales et al.   Bioengineered

Reconstruction and verification of a genome-scale metabolic model for Synechocystis sp. PCC6803

(2011) Katsunori Yoshikawa et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Renewable energy from Cyanobacteria: energy production optimization by metabolic pathway engineering

(2011) Naira Quintana et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Minimal cut sets in a metabolic network are elementary modes in a dual network

(2011) Kathrin Ballerstein et al.   BIOINFORMATICS

Interplay between Flavodiiron Proteins and Photorespiration inSynechocystissp. PCC 6803

(2011) Yagut Allahverdiyeva et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

EMILiO: A fast algorithm for genome-scale strain design

(2011) Laurence Yang et al.   METABOLIC ENGINEERING

Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol

(2011) Harry Yim et al.   Nature Chemical Biology

Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

(2010) Arnau Montagud et al.   BMC Systems Biology

OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains

(2010) Joonhoon Kim et al.   BMC Systems Biology

CASOP: A Computational Approach for Strain Optimization aiming at high Productivity

(2010) Oliver Hädicke et al.   JOURNAL OF BIOTECHNOLOGY

Computing complex metabolic intervention strategies using constrained minimal cut sets

(2010) Oliver Hädicke et al.   METABOLIC ENGINEERING

The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth

(2010) Henning Knoop et al.   PLANT PHYSIOLOGY

The Importance of Energy Balance in Improving Photosynthetic Productivity

(2010) D. M. Kramer et al.   PLANT PHYSIOLOGY

Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways

(2009) N. Tepper et al.   BIOINFORMATICS

Energy biotechnology with cyanobacteria

(2009) S Andreas Angermayr et al.   CURRENT OPINION IN BIOTECHNOLOGY

Characterization of an Alcohol Dehydrogenase from the Cyanobacterium Synechocystis sp. Strain PCC 6803 That Responds to Environmental Stress Conditions via the Hik34-Rre1 Two-Component System

(2009) R. Vidal et al.   JOURNAL OF BACTERIOLOGY

Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde

(2009) Shota Atsumi et al.   NATURE BIOTECHNOLOGY

Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism

(2008) Cong T. Trinh et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Applications of cyanobacteria in biotechnology

(2008) R.M.M. Abed et al.   JOURNAL OF APPLIED MICROBIOLOGY

Computing Knock-Out Strategies in Metabolic Networks

(2008) Utz-Uwe Haus et al.   JOURNAL OF COMPUTATIONAL BIOLOGY