RNA ‐seq analyses of Arabidopsis thaliana seedlings after exposure to blue‐light phototropic stimuli in microgravity

The combined effects of real or simulated microgravity and red-light photoactivation on plant root meristematic cells

(2018) Miguel A. Valbuena et al.   PLANTA

Cell cycle acceleration and changes in essential nuclear functions induced by simulated microgravity in a synchronized Arabidopsis cell culture

(2018) Khaled Y. Kamal et al.   PLANT CELL AND ENVIRONMENT

A novel blue-light phototropic response is revealed in roots of Arabidopsis thaliana in microgravity

(2016) Joshua P. Vandenbrink et al.   PLANTA

Phototropic solar tracking in sunflower plants: an integrative perspective

(2015) Ulrich Kutschera et al.   ANNALS OF BOTANY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

D-Root: a system for cultivating plants with the roots in darkness or under different light conditions

(2015) Javier Silva-Navas et al.   PLANT JOURNAL

Changes in operational procedures to improve spaceflight experiments in plant biology in the European Modular Cultivation System

(2014) John Z. Kiss et al.   ADVANCES IN SPACE RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The blue light receptor Phototropin 1 suppresses lateral root growth by controlling cell elongation

(2014) A. Moni et al.   PLANT BIOLOGY

Phototropism: Growing towards an Understanding of Plant Movement

(2014) E. Liscum et al.   PLANT CELL

Phototropism: Some History, Some Puzzles, and a Look Ahead

(2014) W. R. Briggs   PLANT PHYSIOLOGY

Turning heads: The biology of solar tracking in sunflower

(2014) Joshua P. Vandenbrink et al.   PLANT SCIENCE

Light and gravity signals synergize in modulating plant development

(2014) Joshua P. Vandenbrink et al.   Frontiers in Plant Science

Meristematic cell proliferation and ribosome biogenesis are decoupled in diamagnetically levitated Arabidopsis seedlings

(2013) Ana Manzano et al.   BMC PLANT BIOLOGY

Characterization of photosystem I in rice (Oryza sativa L.) seedlings upon exposure to random positioning machine

(2013) Boya Chen et al.   PHOTOSYNTHESIS RESEARCH

Phototropism and gravitropism in transgenic lines of Arabidopsis altered in the phytochrome pathway

(2012) Jane A. Hopkins et al.   PHYSIOLOGIA PLANTARUM

Effects of Clinorotation on Growth and Chlorophyll Content of Rice Seeds

(2010) Sagar Shankar Jagtap et al.   MICROGRAVITY SCIENCE AND TECHNOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Plant cell proliferation and growth are altered by microgravity conditions in spaceflight

(2009) Isabel Matía et al.   JOURNAL OF PLANT PHYSIOLOGY

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Regulation and evolution of chlorophyll metabolism

(2008) Tatsuru Masuda et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Light Plays an Essential Role in Intracellular Distribution of Auxin Efflux Carrier PIN2 in Arabidopsis thaliana

(2008) Ashverya Laxmi et al.   PLoS One