Differences in DNA Methylation Between Disease-Resistant and Disease-Susceptible Chinese Tongue Sole (Cynoglossus semilaevis) Families

Genomic, Transcriptomic, and Epigenomic Features Differentiate Genes That Are Relevant for Muscular Polyunsaturated Fatty Acids in the Common Carp

(2019) Hanyuan Zhang et al.   Frontiers in Genetics

Associations Between Behavioral Effects of Bisphenol A and DNA Methylation in Zebrafish Embryos

(2019) Pål A. Olsvik et al.   Frontiers in Genetics

Gene activation precedes DNA demethylation in response to infection in human dendritic cells

(2019) Alain Pacis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The DNA Methylation Landscape of Stickleback Reveals Patterns of Sex Chromosome Evolution and Effects of Environmental Salinity

(2018) David C H Metzger et al.   Genome Biology and Evolution

Dynamic alterations in methylation of global DNA and growth-related genes in large yellow croaker (Larimichthys crocea) in response to starvation stress

(2018) Yu Zhang et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Persistent and plastic effects of temperature on DNA methylation across the genome of threespine stickleback ( Gasterosteus aculeatus )

(2017) David C. H. Metzger et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

DNA methylation of CiRIG-I gene notably relates to the resistance against GCRV and negatively-regulates mRNA expression in grass carp, Ctenopharyngodon idella

(2016) Xueying Shang et al.   IMMUNOBIOLOGY

Genome-wide methylation analysis identified sexually dimorphic methylated regions in hybrid tilapia

(2016) Zi Yi Wan et al.   Scientific Reports

A Teleost Bactericidal Permeability-Increasing Protein Kills Gram-Negative Bacteria, Modulates Innate Immune Response, and Enhances Resistance against Bacterial and Viral Infection

(2016) Yuan-yuan Sun et al.   PLoS One

The DmtA methyltransferase contributes to Aspergillus flavus conidiation, sclerotial production, aflatoxin biosynthesis and virulence

(2016) Kunlong Yang et al.   Scientific Reports

CpA/CpG methylation of CiMDA5 possesses tight association with the resistance against GCRV and negatively regulates mRNA expression in grass carp, Ctenopharyngodon idella

(2015) Xueying Shang et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Transcriptome analysis revealed changes of multiple genes involved in immunity in Cynoglossus semilaevis during Vibrio anguillarum infection

(2015) Xiang Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Gene Expression Variations of Red—White Skin Coloration in Common Carp (Cyprinus carpio)

(2015) Xiao-Min Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Epigenetic control of intestinal barrier function and inflammation in zebrafish

(2015) Lindsay Marjoram et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae

(2015) Junhyun Jeon et al.   Scientific Reports

Identification and validation of the methylation biomarkers of non-small cell lung cancer (NSCLC)

(2015) Shicheng Guo et al.   Clinical Epigenetics

DNA methylation in schizophrenia: progress and challenges

(2015) Xiaofen Zong et al.   Science Bulletin

Genome-wide DNA methylation changes in skeletal muscle between young and middle-aged pigs

(2014) Long Jin et al.   BMC GENOMICS

Epigenetic modification and inheritance in sexual reversal of fish

(2014) C. Shao et al.   GENOME RESEARCH

The novel colorectal cancer biomarkersCDO1, ZSCAN18andZNF331are frequently methylated across gastrointestinal cancers

(2014) Hege Marie Vedeld et al.   INTERNATIONAL JOURNAL OF CANCER

Evolution of the Inflammatory Response in Vertebrates: Fish TNF-  Is a Powerful Activator of Endothelial Cells but Hardly Activates Phagocytes

(2014) F. J. Roca et al.   JOURNAL OF IMMUNOLOGY

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

(2014) Sébastien A Smallwood et al.   NATURE METHODS

DNA Methylation in Mammals

(2014) E. Li et al.   Cold Spring Harbor Perspectives in Biology

Reprogramming the Maternal Zebrafish Genome after Fertilization to Match the Paternal Methylation Pattern

(2013) Magdalena E. Potok et al.   CELL

Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos

(2013) Lan Jiang et al.   CELL

Genome-wide DNA methylation assay reveals novel candidate biomarker genes in cervical cancer

(2013) Sanja A Farkas et al.   Epigenetics

Global Epigenomic Reconfiguration During Mammalian Brain Development

(2013) R. Lister et al.   SCIENCE

CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression

(2012) Raghunath Chatterjee et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Comparative Analyses of DNA Methylation and Sequence Evolution Using Nasonia Genomes

(2011) J. Park et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cancer epigenetics reaches mainstream oncology

(2011) Manuel Rodríguez-Paredes et al.   NATURE MEDICINE

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

Innate Immune Responses to Danger Signals in Systemic Inflammatory Response Syndrome and Sepsis

(2009) A. Castellheim et al.   SCANDINAVIAN JOURNAL OF IMMUNOLOGY

Characterization and functional analysis of goldfish (Carassius auratus L.) tumor necrosis factor-alpha

(2007) Leon Grayfer et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY