4.3 Article

3D printed droplet generation devices for serial femtosecond crystallography enabled by surface coating

Journal

JOURNAL OF APPLIED CRYSTALLOGRAPHY
Volume 52, Issue -, Pages 997-1008

Publisher

INT UNION CRYSTALLOGRAPHY
DOI: 10.1107/S1600576719010343

Keywords

microfluidic devices; serial crystallography; injection; droplet generation

Funding

  1. NIGMS NIH HHS [R01 GM095583] Funding Source: Medline
  2. NIH HHS [S10 OD021816] Funding Source: Medline

Ask authors/readers for more resources

The role of surface wetting properties and their impact on the performance of 3D printed microfluidic droplet generation devices for serial femtosecond crystallography (SFX) are reported. SFX is a novel crystallography method enabling structure determination of proteins at room temperature with atomic resolution using X-ray free-electron lasers (XFELs). In SFX, protein crystals in their mother liquor are delivered and intersected with a pulsed X-ray beam using a liquid jet injector. Owing to the pulsed nature of the X-ray beam, liquid jets tend to waste the vast majority of injected crystals, which this work aims to overcome with the delivery of aqueous protein crystal suspension droplets segmented by an oil phase. For this purpose, 3D printed droplet generators that can be easily customized for a variety of XFEL measurements have been developed. The surface properties, in particular the wetting properties of the resist materials compatible with the employed two-photon printing technology, have so far not been characterized extensively, but are crucial for stable droplet generation. This work investigates experimentally the effectiveness and the long-term stability of three different surface treatments on photoresist films and glass as models for our 3D printed droplet generator and the fused silica capillaries employed in the other fluidic components of an SFX experiment. Finally, the droplet generation performance of an assembly consisting of the 3D printed device and fused silica capillaries is examined. Stable and reproducible droplet generation was achieved with a fluorinated surface coating which also allowed for robust downstream droplet delivery. Experimental XFEL diffraction data of crystals formed from the large membrane protein complex photosystem I demonstrate the full compatibility of the new injection method with very fragile membrane protein crystals and show that successful droplet generation of crystal-laden aqueous droplets intersected by an oil phase correlates with increased crystal hit rates.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.3
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Multidisciplinary

Co-flow injection for serial crystallography at X-ray free-electron lasers

Diandra Doppler, Mohammad T. Rabbani, Romain Letrun, Jorvani Cruz Villarreal, Dai Hyun Kim, Sahir Gandhi, Ana Egatz-Gomez, Mukul Sonker, Joe Chen, Faisal H. M. Koua, Jayhow Yang, Mohamed Youssef, Victoria Mazalova, Sasa Bajt, Megan L. Shelby, Matt A. Coleman, Max O. Wiedorn, Juraj Knoska, Silvan Schon, Tokushi Sato, Mark S. Hunter, Ahmad Hosseinizadeh, Christopher Kuptiz, Reza Nazari, Roberto C. Alvarez, Konstantinos Karpos, Sahba Zaare, Zachary Dobson, Erin Discianno, Shangji Zhang, James D. Zook, Johan Bielecki, Raphael de Wijn, Adam R. Round, Patrik Vagovic, Marco Kloos, Mohammad Vakili, Gihan K. Ketawala, Natasha E. Stander, Tien L. Olson, Katherine Morin, Jyotirmory Mondal, Jonathan Nguyen, Jose Domingo Meza-Aguilar, Gerdenis Kodis, Sara Vaiana, Jose M. Martin-Garcia, Valerio Mariani, Peter Schwander, Marius Schmidt, Marc Messerschmidt, Abbas Ourmazd, Nadia Zatsepin, Uwe Weierstall, Barry D. Bruce, Adrian P. Mancuso, Thomas Grant, Anton Barty, Henry N. Chapman, Matthias Frank, Raimund Fromme, John C. H. Spence, Sabine Botha, Petra Fromme, Richard A. Kirian, Alexandra Ros

Summary: This study proposes a new method to address the issue of crystal introduction in the X-ray beam. By using an inert oil phase to supplement the flow of the sample, stable injection of crystals from two different materials can be achieved, avoiding crystal clogging and potentially increasing the preservation rate of crystal samples, enabling degradation-free light-induced time-resolved SFX.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2022)

Article Biochemical Research Methods

MIMAS: microfluidic platform in tandem with MALDI mass spectrometry for protein quantification from small cell ensembles

Jorvani Cruz Villarreal, Rory Kruithoff, Ana Egatz-Gomez, Paul D. Coleman, Robert Ros, Todd R. Sandrin, Alexandra Ros

Summary: Understanding cell-to-cell variation at the molecular level is critical for research and this study presents a microfluidic platform combined with MALDI-TOF-MS for the detection and quantification of targeted proteins from small cell ensembles. The integrated on-chip approach allows for protein quantification from cell lysate and demonstrates promising potential for single-cell analysis.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2022)

Article Physics, Applied

Quantitative spatiotemporal density evolution of aluminum heated purely by monochromatic electrons

J. E. Coleman, J. E. Koglin, H. E. Morris, N. B. Ramey, D. T. Offermann

Summary: A spatially resolved air-wedge shearing interferometer and shadowgraph diagnostic is used to measure electron density with a resolution of 40 μm. By heating 100 μm-thick aluminum foils with a monoenergetic electron bunch, electron densities up to 10(20) cm(-3) are resolved. The diagnostic also provides measurements of total phase shift, transmission, and electron density. Comparisons with radiation hydrodynamics simulations show rough quantitative agreement.

JOURNAL OF APPLIED PHYSICS (2022)

Article Physics, Applied

Optical Funnel to Guide and Focus Virus Particles for X-Ray Diffractive Imaging

Salah Awel, Sebastian Lavin-Varela, Nils Roth, Daniel A. Horke, Andrei Rode, Richard A. Kirian, Jochen Kuepper, Henry N. Chapman

Summary: This study explores the concept of using photophoretic forces to deliver bioparticles to the focus of an x-ray free-electron laser (XFEL) for femtosecond x-ray diffractive imaging. The experimental demonstration shows that high-speed aerosolized viruses can be transversely compressed via photophoretic forces in a low-pressure gas environment. Particle-velocimetry measurements estimate the relative temperature gradients induced on the viruses by the laser. The results demonstrate the potential of an optical funnel to enhance particle-delivery efficiency in XFEL imaging and spectroscopy.

PHYSICAL REVIEW APPLIED (2022)

Article Chemistry, Multidisciplinary

A Metropolis Monte Carlo algorithm for merging single-particle diffraction intensities

B. R. Mobley, K. E. Schmidt, J. P. J. Chen, R. A. Kirian

Summary: This paper describes the modification of the EMC algorithm to use Metropolis Monte Carlo sampling for merging diffraction patterns with multiple missing parameters. Through comparison with the standard EMC algorithm, the effectiveness of this modification is demonstrated.

ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES (2022)

Article Instruments & Instrumentation

Observations of phase changes in monoolein during high viscous injection

Daniel J. Wells, Peter Berntsen, Eugeniu Balaur, Cameron M. Kewish, Patrick Adams, Andrew Aquila, Jack Binns, Sebastien Boutet, Hayden Broomhall, Carl Caleman, Andrew Christofferson, Charlotte E. Conn, Caroline Dahlqvist, Leonie Flueckiger, Francisco Gian Roque, Tamar L. Greaves, Majid Hejazian, Mark Hunter, Marjan Hadian Jazi, H. Olof Jonsson, Sachini Kadaoluwa Pathirannahalage, Richard A. Kirian, Alex Kozlov, Ruslan P. Kurta, Hugh Marman, Derek Mendez, Andrew Morgan, Keith Nugent, Dominik Oberthuer, Harry Quiney, Juliane Reinhardt, Saumitra Saha, Jonas A. Sellberg, Raymond Sierra, Max Wiedorn, Brian Abbey, Andrew Martin, Connie Darmanin

Summary: Serial crystallography of membrane proteins often uses high-viscosity injectors to deliver crystals to the X-ray beam. However, the potential impact of the injection process on the structure of the carrier medium, lipidic cubic phase (LCP), is not well understood. This study investigates the influence of injectors on LCP structure by analyzing phase changes during continuous flow injection. The results suggest that reservoir pressure does not correlate with observed phase changes, and different phase behaviors are observed during vacuum and atmospheric pressure injections.

JOURNAL OF SYNCHROTRON RADIATION (2022)

Article Biochemistry & Molecular Biology

Room-temperature structural studies of SARS-CoV-2 protein NendoU with an X-ray free-electron laser

Rebecca J. Jernigan, Dhenugen Logeswaran, Diandra Doppler, Nirupa Nagaratnam, Mukul Sonker, Jay-How Yang, Gihan Ketawala, Jose M. Martin-Garcia, Megan L. Shelby, Thomas D. Grant, Valerio Mariani, Alexandra Tolstikova, Michelle Z. Sheikh, Mimi Cho Yung, Matthew A. Coleman, Sahba Zaare, Emily K. Kaschner, Mohammad Towshif Rabbani, Reza Nazari, Michele A. Zacks, Brandon Hayes, Raymond G. Sierra, Mark S. Hunter, Stella Lisova, Alexander Batyuk, Christopher Kupitz, Sebastien Boutet, Debra T. Hansen, Richard A. Kirian, Marius Schmidt, Raimund Fromme, Matthias Frank, Alexandra Ros, Julian J. -L. Chen, Sabine Botha, Petra Fromme

Summary: NendoU from SARS-CoV-2 cleaves the polyuridine leader sequence of antisense viral RNA, allowing the virus to evade the innate immune system. The room-temperature structure of NendoU reveals its flexibility and dynamics, suggesting its function as an allosteric switch. The enzyme shows preference for uridine-purine cleavage, and its activity is maintained even in crystal form. This study sets a benchmark for future time-resolved crystallography research and may contribute to the development of more effective antivirals against coronaviral infections.

STRUCTURE (2023)

Article Chemistry, Multidisciplinary

Detection of a Geminate Photoproduct of Bovine Cytochrome c Oxidase by Time-Resolved Serial Femtosecond Crystallography

Izumi Ishigami, Sergio Carbajo, Nadia Zatsepin, Masahide Hikita, Chelsie E. Conrad, Garrett Nelson, Jesse Coe, Shibom Basu, Thomas Grant, Matthew H. Seaberg, Raymond G. Sierra, Mark S. Hunter, Petra Fromme, Raimund Fromme, Denis L. Rousseau, Syun-Ru Yeh

Summary: Cytochrome c oxidase (CcO) is a hemeprotein that reduces dioxygen to water. It has a unique structure with a binuclear center composed of a copper atom and a heme iron. In the CO complex of CcO, the CO molecule dissociates from the heme iron and moves to a temporary binding site between the copper atom and the heme iron. This new structure provides insight into the ligand dissociation trajectory and protein dynamics.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Review Biochemistry & Molecular Biology

Review Review of serial femtosecond crystallography including the COVID-19 pandemic impact and future outlook

Sabine Botha, Petra Fromme

Summary: Serial femtosecond crystallography (SFX) is a revolutionary method that allows the collection of X-ray diffraction data from tiny crystals at room temperature, enabling high temporal resolution studies of macromolecules. The global COVID-19 pandemic in 2020 had a significant impact on SFX research, leading to a shift in focus towards studying the SARS-CoV-2 virus.

STRUCTURE (2023)

Article Biochemical Research Methods

Modular droplet injector for sample conservation providing new structural insight for the conformational heterogeneity in the disease-associated NQO1 enzyme

Diandra Doppler, Mukul Sonker, Ana Egatz-Gomez, Alice Grieco, Sahba Zaare, Rebecca Jernigan, Jose Domingo Meza-Aguilar, Mohammad T. T. Rabbani, Abhik Manna, Roberto C. C. Alvarez, Konstantinos Karpos, Jorvani C. Cruz Villarreal, Garrett Nelson, Jay-How Yang, Jackson Carrion, Katherine Morin, Gihan K. K. Ketawala, Angel L. L. Pey, Miguel Angel Ruiz-Fresneda, Juan Luis Pacheco-Garcia, Juan A. A. Hermoso, Reza Nazari, Raymond Sierra, Mark S. S. Hunter, Alexander Batyuk, Christopher J. J. Kupitz, Robert E. E. Sublett, Stella Lisova, Valerio Mariani, Sebastien Boutet, Raimund Fromme, Thomas D. D. Grant, Sabine Botha, Petra Fromme, Richard A. A. Kirian, Jose Manuel Martin-Garcia, Alexandra Ros

Summary: A modular microfluidic droplet injector (MDI) design was used to successfully deliver microcrystals of NQO1 and phycocyanin, reducing sample consumption by up to 4-fold. This method allows for the study of protein crystals that are difficult to obtain in large quantities necessary for continuous injection.

LAB ON A CHIP (2023)

Article Chemistry, Multidisciplinary

Microwave synthesis of upconverting nanoparticles with bis(2-ethylhexyl) adipate

Ana Egatz-Gomez, Michaela Asher, Rozabel Peterson, Manuel A. Roldan, Alexandra Ros

Summary: This study presents a straightforward, accessible, and repeatable microwave-assisted synthesis method for scaling up the production of UCNPs with well-defined size and crystallinity.

RSC ADVANCES (2022)

Meeting Abstract Biophysics

Time-resolved functional expansion of visual rhodopsin detected by x-ray scattering

C. Swathi K. Menon, Konstantinos Karpos, Thomas D. Grant, Andrey V. Struts, Steven D. E. Fried, Roberto C. Alvarez, Suchithranga M. D. C. Perera, Irina V. Kosheleva, Alan Grossfield, Petra Fromme, Richard A. Kirian, Michael F. Brown

BIOPHYSICAL JOURNAL (2022)

Meeting Abstract Biophysics

Functional dynamics of G-protein-coupled receptor shown by femtosecond X-ray scattering

Michael F. Brown, Thomas D. Grant, Suchithranga M. D. C. Perera, Leslie Salas-Estrada, Andrey V. Struts, Konstantinos Karpos, Udeep Chawla, Steven D. E. Fried, C. Swathi K. Menon, Nipuna Weerasinghe, Domingo Meza, Derek Mendez, Alan Grossfield, Petra Fromme, Richard A. Kirian

BIOPHYSICAL JOURNAL (2022)

No Data Available