A Target Capture-Based Method to Estimate Ploidy From Herbarium Specimens
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Title
A Target Capture-Based Method to Estimate Ploidy From Herbarium Specimens
Authors
Keywords
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Journal
Frontiers in Plant Science
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-07-24
DOI
10.3389/fpls.2019.00937
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Note: Only part of the references are listed.- A reference high-density genetic map of greater yam (Dioscorea alata L.)
- (2019) Fabien Cormier et al. THEORETICAL AND APPLIED GENETICS
- Reply to Nakatani and McLysaght: Analyzing deep duplication events
- (2019) Zheng Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Macrosynteny analysis shows the absence of ancient whole-genome duplication in lepidopteran insects
- (2019) Yoichiro Nakatani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae)
- (2019) Marybel Soto Gomez et al. Applications in Plant Sciences
- Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta)
- (2018) Matthew B. Parks et al. AMERICAN JOURNAL OF BOTANY
- Impact of whole-genome duplication events on diversification rates in angiosperms
- (2018) Jacob B. Landis et al. AMERICAN JOURNAL OF BOTANY
- nQuire: a statistical framework for ploidy estimation using next generation sequencing
- (2018) Clemens L. Weiß et al. BMC BIOINFORMATICS
- A nuclear Xdh phylogenetic analysis of yams (Dioscorea: Dioscoreaceae) congruent with plastid trees reveals a new Neotropical lineage
- (2018) Juan Viruel et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- OUP accepted manuscript
- (2018) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation
- (2018) Jonathan F Wendel et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above
- (2018) Tamara Villaverde et al. NEW PHYTOLOGIST
- Development of novel EST-SSR markers for ploidy identification based on de novo transcriptome assembly for Misgurnus anguillicaudatus
- (2018) Bing Feng et al. PLoS One
- Multiple large-scale gene and genome duplications during the evolution of hexapods
- (2018) Zheng Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ploidy and Number of Chromosomes in the Alveolate Alga Chromera velia
- (2018) Jan Vazač et al. PROTIST
- Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae)
- (2018) Jamie Mccann et al. SYSTEMATIC BIOLOGY
- Polyploid lineages in the genus Porphyra
- (2018) Elena Varela-Álvarez et al. Scientific Reports
- Assessing the performance of Ks plots for detecting ancient whole genome duplications
- (2018) George P Tiley et al. Genome Biology and Evolution
- Functional trait divergence and trait plasticity confer polyploid advantage in heterogeneous environments
- (2018) Na Wei et al. NEW PHYTOLOGIST
- A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
- (2018) Matthew G Johnson et al. SYSTEMATIC BIOLOGY
- Current Strategies of Polyploid Plant Genome Sequence Assembly
- (2018) Maria Kyriakidou et al. Frontiers in Plant Science
- The evolutionary significance of polyploidy
- (2017) Yves Van de Peer et al. NATURE REVIEWS GENETICS
- Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention
- (2017) Terezie Mandáková et al. PLANT JOURNAL
- Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo Clade (Caryophyllales)
- (2017) Abigail J Moore et al. SYSTEMATIC BIOLOGY
- Neo- and Paleopolyploidy contribute to the species diversity of Asplenium -the most species-rich genus of ferns
- (2017) Harald Schneider et al. Journal of Systematics and Evolution
- Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers
- (2017) Gemma Arnau et al. PLoS One
- Evidence for an ancient whole genome duplication in the cycad lineage
- (2017) Danielle Roodt et al. PLoS One
- Phylogenetic evidence for cladogenetic polyploidization in land plants
- (2016) Shing H. Zhan et al. AMERICAN JOURNAL OF BOTANY
- The Case of the Missing Ancient Fungal Polyploids
- (2016) Matthew A. Campbell et al. AMERICAN NATURALIST
- Unidirectional diploid-tetraploid introgression among British birch trees with shifting ranges shown by restriction site-associated markers
- (2016) Jasmin Zohren et al. MOLECULAR ECOLOGY
- Historical biogeography of the fern genus Deparia (Athyriaceae) and its relation with polyploidy
- (2016) Li-Yaung Kuo et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Genome evolution of ferns: evidence for relative stasis of genome size across the fern phylogeny
- (2016) James Clark et al. NEW PHYTOLOGIST
- Evolution of gene duplication in plants
- (2016) Nicholas Panchy et al. PLANT PHYSIOLOGY
- Retrieval of hundreds of nuclear loci from herbarium specimens
- (2016) Michelle L. Hart et al. TAXON
- Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata
- (2015) S. Servick et al. AMERICAN JOURNAL OF BOTANY
- The wondrous cycles of polyploidy in plants
- (2015) Jonathan F. Wendel AMERICAN JOURNAL OF BOTANY
- Tales from the crypt: genome mining from fungarium specimens improves resolution of the mushroom tree of life
- (2015) Bryn T. M. Dentinger et al. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Morphological, SSR and ploidy analysis of water yam (Dioscorea alata L.) accessions for utilization of aerial tubers as planting materials
- (2015) Gezahegn Girma et al. GENETIC RESOURCES AND CROP EVOLUTION
- Late Cretaceous-Early Eocene origin of yams (Dioscorea, Dioscoreaceae) in the Laurasian Palaearctic and their subsequent Oligocene-Miocene diversification
- (2015) Juan Viruel et al. JOURNAL OF BIOGEOGRAPHY
- Horsetails Are Ancient Polyploids: Evidence fromEquisetum giganteum
- (2015) Kevin Vanneste et al. PLANT CELL
- Using phylogenomics to resolve mega-families: An example from Compositae
- (2015) Jennifer R. Mandel et al. Journal of Systematics and Evolution
- ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
- (2015) Gabriel R. A. Margarido et al. PLoS Computational Biology
- MarkerMiner 1.0: A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes
- (2015) Srikar Chamala et al. Applications in Plant Sciences
- Early genome duplications in conifers and other seed plants
- (2015) Z. Li et al. Science Advances
- Doubling down on genomes: Polyploidy and crop plants
- (2014) Simon Renny-Byfield et al. AMERICAN JOURNAL OF BOTANY
- Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data
- (2014) F. Favero et al. ANNALS OF ONCOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Inferring copy number and genotype in tumour exome data
- (2014) Kaushalya C Amarasinghe et al. BMC GENOMICS
- From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition
- (2014) Guillaume Besnard et al. JOURNAL OF EXPERIMENTAL BOTANY
- Conserved genetic regions across angiosperms as tools to develop single-copy nuclear markers in gymnosperms: an example using cycads
- (2014) Dayana E. Salas-Leiva et al. Molecular Ecology Resources
- The Chromosome Counts Database (CCDB) - a community resource of plant chromosome numbers
- (2014) Anna Rice et al. NEW PHYTOLOGIST
- Ancient and modern environmental DNA
- (2014) Mikkel Winther Pedersen et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Phylogeny and Divergence Times of Gymnosperms Inferred from Single-Copy Nuclear Genes
- (2014) Ying Lu et al. PLoS One
- Phylotranscriptomic analysis of the origin and early diversification of land plants
- (2014) Norman J. Wickett et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
- (2014) Camille Berthelot et al. Nature Communications
- Hyb-Seq: Combining Target Enrichment and Genome Skimming for Plant Phylogenomics
- (2014) Kevin Weitemier et al. Applications in Plant Sciences
- High ploidy diversity and distinct patterns of cytotype distribution in a widespread species of Oxalis in the Greater Cape Floristic Region
- (2013) Jana Krejčíková et al. ANNALS OF BOTANY
- Microsatellite and flow cytometry analysis to help understand the origin of Dioscorea alata polyploids
- (2013) A. Nemorin et al. ANNALS OF BOTANY
- Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens
- (2013) Martijn Staats et al. PLoS One
- Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
- (2013) R. De Smet et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
- (2013) Kentaro Yoshida et al. eLife
- Inference of Genome Duplications from Age Distributions Revisited
- (2012) Kevin Vanneste et al. MOLECULAR BIOLOGY AND EVOLUTION
- How to Open the Treasure Chest? Optimising DNA Extraction from Herbarium Specimens
- (2012) Tiina Särkinen et al. PLoS One
- Polyploidy in fungi: evolution after whole-genome duplication
- (2012) W. Albertin et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Reconciling Gene and Genome Duplication Events: Using Multiple Nuclear Gene Families to Infer the Phylogeny of the Aquatic Plant Family Pontederiaceae
- (2011) Rob W. Ness et al. MOLECULAR BIOLOGY AND EVOLUTION
- Speciation and evolution in the Gagea reticulata species complex (Tulipeae; Liliaceae)
- (2011) Mehdi Zarrei et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Ancestral polyploidy in seed plants and angiosperms
- (2011) Yuannian Jiao et al. NATURE
- Recently Formed Polyploid Plants Diversify at Lower Rates
- (2011) I. Mayrose et al. SCIENCE
- Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels
- (2010) Jill M Duarte et al. BMC EVOLUTIONARY BIOLOGY
- The evolution of gene duplications: classifying and distinguishing between models
- (2010) Hideki Innan et al. NATURE REVIEWS GENETICS
- The diploid nature of the ChileanEpipetrumand a new base number in the Dioscoreaceae
- (2010) Juan Viruel et al. NEW ZEALAND JOURNAL OF BOTANY
- Systematic Revision of the Epipetrum Group of Dioscorea (Dioscoreaceae) Endemic to Chile
- (2010) Juan Viruel et al. SYSTEMATIC BOTANY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The allopolyploid origin ofNarcissus obsoletus(Alliaceae): identification of parental genomes by karyotype characterization and genomicin situhybridization
- (2009) ZOILA DÍAZ LIFANTE et al. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
- The pentatricopeptide repeat (PPR) gene family, a tremendous resource for plant phylogenetic studies
- (2009) Yao-Wu Yuan et al. NEW PHYTOLOGIST
- The frequency of polyploid speciation in vascular plants
- (2009) T. E. Wood et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA ploidy level variability of some fescues (Festuca subg. Festuca, Poaceae) from Central and Southern Europe measured in fresh plants and herbarium specimens
- (2008) Petr Šmarda BIOLOGIA
- Natural polyploidy in Vanilla planifolia (Orchidaceae)
- (2008) Séverine Bory et al. GENOME
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