Resistance Breeding of Common Bean Shapes the Physiology of the Rhizosphere Microbiome

Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils

(2018) Víctor J. Carrión et al.   ISME Journal

Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean

(2018) Lucas William Mendes et al.   ISME Journal

Insights to plant-microbe interactions provide opportunities to improve resistance breeding against root diseases in grain legumes

(2018) Lukas Wille et al.   PLANT CELL AND ENVIRONMENT

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Antibiotic Resistance Mediated by the MacB ABC Transporter Family: A Structural and Functional Perspective

(2018) Nicholas P. Greene et al.   Frontiers in Microbiology

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

(2017) Lucas William Mendes et al.   ISME Journal

Influence of red mud on soil microbial communities: Application and comprehensive evaluation of the Biolog EcoPlate approach as a tool in soil microbiological studies

(2017) Viktória Feigl et al.   SCIENCE OF THE TOTAL ENVIRONMENT

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data

(2016) Susann Mönchgesang et al.   Scientific Reports

Fungal invasion of the rhizosphere microbiome

(2015) Emilie Chapelle et al.   ISME Journal

Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping

(2015) Rakesh Santhanam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Invasions: The Process, Patterns, and Mechanisms

(2015) Cyrus Alexander Mallon et al.   TRENDS IN MICROBIOLOGY

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria

(2014) Joseph Nesme et al.   ENVIRONMENTAL MICROBIOLOGY

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

(2014) Molly K Gibson et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

IAC-Alvorada and IAC-Diplomata: new common bean cultivars

(2014) S.A.M. Carbonell et al.   Crop Breeding and Applied Biotechnology

'IAC Milênio' - Common bean cultivar with high grain quality

(2014) Sérgio Augusto Morais Carbonell et al.   Crop Breeding and Applied Biotechnology

Amino acids in the rhizosphere: From plants to microbes

(2013) Luke A. Moe   AMERICAN JOURNAL OF BOTANY

The Sialidases of Clostridium perfringens Type D Strain CN3718 Differ in Their Properties and Sensitivities to Inhibitors

(2013) Jihong Li et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

The form of nitrogen nutrition affects resistance against Pseudomonas syringae pv. phaseolicola in tobacco

(2012) Kapuganti J. Gupta et al.   JOURNAL OF EXPERIMENTAL BOTANY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Functional diversity of bacterial genes associated with aromatic hydrocarbon degradation in anthropogenic dark earth of Amazonia

(2012) Mariana Gomes Germano et al.   PESQUISA AGROPECUARIA BRASILEIRA

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

The d-galacturonic acid catabolic pathway in Botrytis cinerea

(2011) Lisha Zhang et al.   FUNGAL GENETICS AND BIOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

The impact of ice melting on bacterioplankton in the Arctic Ocean

(2010) Maria Montserrat Sala et al.   POLAR BIOLOGY

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Fusarium oxysporum-induced oxidative stress and antioxidative defenses of yellow lupine embryo axes with different sugar levels

(2007) Iwona Morkunas et al.   JOURNAL OF PLANT PHYSIOLOGY