The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid

Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle

(2019) Prerna Vohra et al.   BMC GENOMICS

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

(2019) Rocío Canals et al.   PLOS BIOLOGY

Polar effects of transposon insertion into a minimal bacterial genome

(2019) Clyde A. Hutchison et al.   JOURNAL OF BACTERIOLOGY

The use of chicken and insect infection models to assess the virulence of African Salmonella Typhimurium ST313

(2019) Lizeth Lacharme-Lora et al.   PLoS Neglected Tropical Diseases

Mutation in ESBL Plasmid from Escherichia coli O104:H4 Leads Autoagglutination and Enhanced Plasmid Dissemination

(2018) Mickaël Poidevin et al.   Frontiers in Microbiology

Defective Phagocytic Properties of HIV-Infected Macrophages: How Might They Be Implicated in the Development of Invasive Salmonella Typhimurium?

(2018) Gabrielle Lê-Bury et al.   Frontiers in Immunology

Salmonella Persistence in Tomatoes Requires a Distinct Set of Metabolic Functions Identified by Transposon Insertion Sequencing

(2016) Marcos H. de Moraes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

(2016) Lars Barquist et al.   BIOINFORMATICS

Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo

(2016) Erik Holmqvist et al.   EMBO JOURNAL

The design and analysis of transposon insertion sequencing experiments

(2016) Michael C. Chao et al.   NATURE REVIEWS MICROBIOLOGY

The complex evolutionary history of aminoacyl-tRNA synthetases

(2016) Anargyros Chaliotis et al.   NUCLEIC ACIDS RESEARCH

The Nucleoid Binding Protein H-NS Biases Genome-Wide Transposon Insertion Landscapes

(2016) Satoshi Kimura et al.   mBio

Analysis of Two Complementary Single-Gene Deletion Mutant Libraries of Salmonella Typhimurium in Intraperitoneal Infection of BALB/c Mice

(2016) Cecilia A. Silva-Valenzuela et al.   Frontiers in Microbiology

Disseminated infections with antibiotic-resistant non-typhoidalSalmonellastrains: contributions of host and pathogen factors

(2016) Kristen L. Lokken et al.   Pathogens and Disease

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

The Stringent Response Regulator DksA Is Required for Salmonella enterica Serovar Typhimurium Growth in Minimal Medium, Motility, Biofilm Formation, and Intestinal Colonization

(2015) Shalhevet Azriel et al.   INFECTION AND IMMUNITY

A BTP1 prophage gene present in invasive non-typhoidalSalmonelladetermines composition and length of the O-antigen of the lipopolysaccharide

(2015) Erica Kintz et al.   MOLECULAR MICROBIOLOGY

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium

(2015) Shabarinath Srikumar et al.   PLoS Pathogens

Molecular Characterization of a Multidrug Resistance IncF Plasmid from the Globally Disseminated Escherichia coli ST131 Clone

(2015) Minh Duy Phan et al.   PLoS One

Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids

(2014) Lukasz Dziewit et al.   BMC GENOMICS

High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4

(2014) Yoshiharu Yamaichi et al.   NUCLEIC ACIDS RESEARCH

Expanding the RpoS/σS-Network by RNA Sequencing and Identification of σS-Controlled Small RNAs in Salmonella

(2014) Corinne Lévi-Meyrueis et al.   PLoS One

An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium

(2013) Carsten Kröger et al.   Cell Host & Microbe

The FUN of identifying gene function in bacterial pathogens; insights from Salmonella functional genomics

(2013) Disa L Hammarlöf et al.   CURRENT OPINION IN MICROBIOLOGY

The ribosome triggers the stringent response by RelA via a highly distorted tRNA

(2013) Xabier Agirrezabala et al.   EMBO REPORTS

Transposon Mutagenesis Identified Chromosomal and Plasmid Genes Essential for Adaptation of the Marine Bacterium Dinoroseobacter shibae to Anaerobic Conditions

(2013) M. Ebert et al.   JOURNAL OF BACTERIOLOGY

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

(2013) Tim van Opijnen et al.   NATURE REVIEWS MICROBIOLOGY

A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium

(2013) Lars Barquist et al.   NUCLEIC ACIDS RESEARCH

Comprehensive Assignment of Roles for Salmonella Typhimurium Genes in Intestinal Colonization of Food-Producing Animals

(2013) Roy R. Chaudhuri et al.   PLoS Genetics

Genome Scanning for Conditionally Essential Genes in Salmonella enterica Serotype Typhimurium

(2012) Anita Khatiwara et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-throughput comparison of gene fitness among related bacteria

(2012) Rocio Canals et al.   BMC GENOMICS

Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa

(2012) Nicholas A Feasey et al.   LANCET

Deletion of invH gene in Salmonella enterica serovar Typhimurium limits the secretion of Sip effector proteins

(2012) Niladri Bhusan Pati et al.   MICROBES AND INFECTION

Dalliance: interactive genome viewing on the web

(2011) T. A. Down et al.   BIOINFORMATICS

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

(2011) Ines Thiele et al.   BMC Systems Biology

Effect of Deletion of Genes Involved in Lipopolysaccharide Core and O-Antigen Synthesis on Virulence and Immunogenicity of Salmonella enterica Serovar Typhimurium

(2011) Qingke Kong et al.   INFECTION AND IMMUNITY

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD

(2011) Kathrin S. Fröhlich et al.   NUCLEIC ACIDS RESEARCH

The Cost of Virulence: Retarded Growth of Salmonella Typhimurium Cells Expressing Type III Secretion System 1

(2011) Alexander Sturm et al.   PLoS Pathogens

The Global Burden of NontyphoidalSalmonellaGastroenteritis

(2010) Shannon E. Majowicz et al.   CLINICAL INFECTIOUS DISEASES

An antisense RNA that governs the expression kinetics of a multifunctional virulence gene

(2010) Eun-Jin Lee et al.   MOLECULAR MICROBIOLOGY

Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanism

(2010) Shane C. Dillon et al.   MOLECULAR MICROBIOLOGY

Gut inflammation provides a respiratory electron acceptor for Salmonella

(2010) Sebastian E. Winter et al.   NATURE

Dysregulated Humoral Immunity to Nontyphoidal Salmonella in HIV-Infected African Adults

(2010) C. A. MacLennan et al.   SCIENCE

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

(2009) R. A. Kingsley et al.   GENOME RESEARCH

Effect of the O-Antigen Length of Lipopolysaccharide on the Functions of Type III Secretion Systems in Salmonella enterica

(2009) S. U. Holzer et al.   INFECTION AND IMMUNITY

Epidemics of InvasiveSalmonella entericaSerovar Enteritidis andS. entericaSerovar Typhimurium Infection Associated with Multidrug Resistance among Adults and Children in Malawi

(2008) Melita A. Gordon et al.   CLINICAL INFECTIOUS DISEASES

Simian immunodeficiency virus–induced mucosal interleukin-17 deficiency promotes Salmonella dissemination from the gut

(2008) Manuela Raffatellu et al.   NATURE MEDICINE

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics