Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing

Alarming Situation of Spreading Enteric Viruses Through Sewage Water in Dhaka City: Molecular Epidemiological Evidences

(2019) Sheikh Ariful Hoque et al.   Food and Environmental Virology

Improving the efficacy of sewage treatment decreases norovirus contamination in oysters

(2018) Julien Schaeffer et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Molecular surveillance of norovirus, 2005–16: an epidemiological analysis of data collected from the NoroNet network

(2018) Janko van Beek et al.   LANCET INFECTIOUS DISEASES

Metagenomics for the study of viruses in urban sewage as a tool for public health surveillance

(2018) X. Fernandez-Cassi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Reducing uncertainty in estimating virus reduction by advanced water treatment processes

(2018) Charles P. Gerba et al.   WATER RESEARCH

Glycan recognition in globally dominant human rotaviruses

(2018) Liya Hu et al.   Nature Communications

Microfluidic PCR Amplification and MiSeq Amplicon Sequencing Techniques for High-Throughput Detection and Genotyping of Human Pathogenic RNA Viruses in Human Feces, Sewage, and Oysters

(2018) Mamoru Oshiki et al.   Frontiers in Microbiology

Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses

(2018) Evelien M. Adriaenssens et al.   mSystems

Human noroviruses

(2018) Robert L. Atmar et al.   CURRENT OPINION IN INFECTIOUS DISEASES

Detection of norovirus epidemic genotypes in raw sewage using next generation sequencing

(2018) Tulio M. Fumian et al.   ENVIRONMENT INTERNATIONAL

Characterization of Natural Organic Substances Potentially Hindering RT-PCR-Based Virus Detection in Large Volumes of Environmental Water

(2017) Akihiko Hata et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Next generation microbiological risk assessment meta-omics: The next need for integration

(2017) Luca Cocolin et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Estimation of Human Norovirus Infectivity from Environmental Water Samples by In Situ Capture RT-qPCR Method

(2017) Peng Tian et al.   Food and Environmental Virology

Capturing norovirus transmission

(2017) Miranda de Graaf et al.   Current Opinion in Virology

Metagenomic Sequencing for Surveillance of Food- and Waterborne Viral Diseases

(2017) David F. Nieuwenhuijse et al.   Frontiers in Microbiology

Aquarium Viromes: Viromes of Human-Managed Aquatic Systems

(2017) Yiseul Kim et al.   Frontiers in Microbiology

Metagenomics: The Next Culture-Independent Game Changer

(2017) Jessica D. Forbes et al.   Frontiers in Microbiology

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

(2017) Adriana Alberti et al.   Scientific Data

Occurrence of novel GII.17 and GII.21 norovirus variants in the coastal environment of South Korea in 2015

(2017) Eung Seo Koo et al.   PLoS One

Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing

(2017) Mathis Hjort Hjelmsø et al.   PLoS One

Risk management of viral infectious diseases in wastewater reclamation and reuse: Review

(2016) Daisuke Sano et al.   ENVIRONMENT INTERNATIONAL

Next-generation sequencing and norovirus

(2016) Matthew Cotten et al.   Future Virology

Detection of Hepatitis E Virus in Sewage After an Outbreak on a French Island

(2016) Takayuki Miura et al.   Food and Environmental Virology

Genetic analyses of GII.17 norovirus strains in diarrheal disease outbreaks from December 2014 to March 2015 in Japan reveal a novel polymerase sequence and amino acid substitutions in the capsid region

(2015) Y Matsushima et al.   Eurosurveillance

A novel genus in the order Picornavirales detected in human stool

(2015) Bas B. Oude Munnink et al.   JOURNAL OF GENERAL VIROLOGY

The use of human sewage screening for community surveillance of hepatitis E virus in the UK

(2015) Donald B. Smith et al.   JOURNAL OF MEDICAL VIROLOGY

Zeta Potential and Aggregation of Virus-Like Particle of Human Norovirus and Feline Calicivirus Under Different Physicochemical Conditions

(2015) Idrissa Samandoulgou et al.   Food and Environmental Virology

Sewage Reflects the Microbiomes of Human Populations

(2015) Ryan J. Newton et al.   mBio

Full Genome Virus Detection in Fecal Samples Using Sensitive Nucleic Acid Preparation, Deep Sequencing, and a Novel Iterative Sequence Classification Algorithm

(2014) Matthew Cotten et al.   PLoS One

Host–pathogen co-evolution and glycan interactions

(2014) Jacques Le Pendu et al.   Current Opinion in Virology

Identification of Viral Pathogen Diversity in Sewage Sludge by Metagenome Analysis

(2013) Kyle Bibby et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Histo-Blood Group Antigen-Like Substances of Human Enteric Bacteria as Specific Adsorbents for Human Noroviruses

(2013) T. Miura et al.   JOURNAL OF VIROLOGY

Viral population analysis and minority-variant detection using short read next-generation sequencing

(2013) S. J. Watson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Calicivirus Removal in a Membrane Bioreactor Wastewater Treatment Plant

(2011) Laura C. Sima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An automated genotyping tool for enteroviruses and noroviruses

(2011) A. Kroneman et al.   JOURNAL OF CLINICAL VIROLOGY

Transmission of viruses through shellfish: when specific ligands come into play

(2011) Françoise S Le Guyader et al.   Current Opinion in Virology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Adsorption and Aggregation Properties of Norovirus GI and GII Virus-like Particles Demonstrate Differing Responses to Solution Chemistry

(2010) Allegra K. da Silva et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Two-Log Increase in Sensitivity for Detection of Norovirus in Complex Samples by Concentration with Porcine Gastric Mucin Conjugated to Magnetic Beads

(2008) P. Tian et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY