Full Genome Virus Detection in Fecal Samples Using Sensitive Nucleic Acid Preparation, Deep Sequencing, and a Novel Iterative Sequence Classification Algorithm

Unexplained diarrhoea in HIV-1 infected individuals

(2014) Bas B Oude Munnink et al.   BMC INFECTIOUS DISEASES

Viral population analysis and minority-variant detection using short read next-generation sequencing

(2013) S. J. Watson et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Identification of Hepatotropic Viruses from Plasma Using Deep Sequencing: A Next Generation Diagnostic Tool

(2013) John Law et al.   PLoS One

The Viruses of Wild Pigeon Droppings

(2013) Tung Gia Phan et al.   PLoS One

Autologous Antibody Capture to Enrich Immunogenic Viruses for Viral Discovery

(2013) Bas B. Oude Munnink et al.   PLoS One

Identification of Novel Viruses Using VirusHunter -- an Automated Data Analysis Pipeline

(2013) Guoyan Zhao et al.   PLoS One

Pathogenic Simian Immunodeficiency Virus Infection Is Associated with Expansion of the Enteric Virome

(2012) Scott A. Handley et al.   CELL

Characterization of a novel gyrovirus in human stool and chicken meat

(2012) Daniel K.W. Chu et al.   JOURNAL OF CLINICAL VIROLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Sequence-independent VIDISCA-454 technique to discover new viruses in canine livers

(2012) Mitzi van der Heijden et al.   JOURNAL OF VIROLOGICAL METHODS

Metagenomic Analysis of Viruses from Bat Fecal Samples Reveals Many Novel Viruses in Insectivorous Bats in China

(2012) Xingyi Ge et al.   JOURNAL OF VIROLOGY

Acute Diarrhea in West African Children: Diverse Enteric Viruses and a Novel Parvovirus Genus

(2012) T. G. Phan et al.   JOURNAL OF VIROLOGY

High Variety of Known and New RNA and DNA Viruses of Diverse Origins in Untreated Sewage

(2012) T. F. F. Ng et al.   JOURNAL OF VIROLOGY

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification

(2012) Christine M. Malboeuf et al.   NUCLEIC ACIDS RESEARCH

Human viruses: discovery and emergence

(2012) M. Woolhouse et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic Diversity of the Genus Cosavirus in the Family Picornaviridae: A New Species, Recombination, and 26 New Genotypes

(2012) Beatrix Kapusinszky et al.   PLoS One

Discovery of a Novel Polyomavirus in Acute Diarrheal Samples from Children

(2012) Guixia Yu et al.   PLoS One

Performance of VIDISCA-454 in Feces-Suspensions and Serum

(2012) Michel de Vries et al.   Viruses-Basel

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

The Diversity of Torque Teno Viruses: In Vitro Replication Leads to the Formation of Additional Replication-Competent Subviral Molecules

(2011) E.-M. de Villiers et al.   JOURNAL OF VIROLOGY

The Fecal Viral Flora of California Sea Lions

(2011) L. Li et al.   JOURNAL OF VIROLOGY

The Fecal Virome of Pigs on a High-Density Farm

(2011) T. Shan et al.   JOURNAL OF VIROLOGY

A Sensitive Assay for Virus Discovery in Respiratory Clinical Samples

(2011) Michel de Vries et al.   PLoS One

Two Novel Parvoviruses in Frugivorous New and Old World Bats

(2011) Marta Canuti et al.   PLoS One

Raw Sewage Harbors Diverse Viral Populations

(2011) P. G. Cantalupo et al.   mBio

The Fecal Viral Flora of Wild Rodents

(2011) Tung G. Phan et al.   PLoS Pathogens

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Metagenomic Analysis of the Viromes of Three North American Bat Species: Viral Diversity among Different Bat Species That Share a Common Habitat

(2010) E. F. Donaldson et al.   JOURNAL OF VIROLOGY

Bat Guano Virome: Predominance of Dietary Viruses from Insects and Plants plus Novel Mammalian Viruses

(2010) L. Li et al.   JOURNAL OF VIROLOGY

Evolution of Lactococcus lactis Phages within a Cheese Factory

(2009) G. M. Rousseau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A highly prevalent and genetically diversified Picornaviridae genus in South Asian children

(2008) A. Kapoor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA