A phylogenomic resolution for the taxonomy of Aegean green lizards

Genome-wide markers untangle the green-lizard radiation in the Aegean Sea and support a rare biogeographical pattern

(2019) Panagiotis Kornilios et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography of Aegean green toads (Bufo viridis subgroup): continental hybrid swarm vs. insular diversification with discovery of a new island endemic

(2018) Christophe Dufresnes et al.   BMC EVOLUTIONARY BIOLOGY

Cryptic diversity and molecular systematics of the Aegean Ophiomorus skinks (Reptilia: Squamata), with the description of a new species

(2018) Panagiotis Kornilios et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

A genomic evaluation of taxonomic trends through time in coast horned lizards (genus Phrynosoma )

(2018) Adam D. Leaché et al.   MOLECULAR ECOLOGY

Multilocus phylogeny and coalescent species delimitation in Kotschy's gecko, Mediodactylus kotschyi : Hidden diversity and cryptic species

(2018) Panayiota Kotsakiozi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Selection, drift, and introgression shape MHC polymorphism in lizards

(2018) K. Sagonas et al.   HEREDITY

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestimation of diversity

(2017) Adrián Nieto-Montes de Oca et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hidden diversity in the Podarcis tauricus (Sauria, Lacertidae) species subgroup in the light of multilocus phylogeny and species delimitation

(2017) Nikolaos Psonis et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cutting the Gordian Knot: Phylogenetic and ecological diversification of the Mesalina brevirostris species complex (Squamata, Lacertidae)

(2017) Jiří Šmíd et al.   ZOOLOGICA SCRIPTA

Phylogeography of the Lacerta viridis complex: mitochondrial and nuclear markers provide taxonomic insights

(2016) Ellen Marzahn et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

(2016) Olga Chernomor et al.   SYSTEMATIC BIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Cryptic diversity within the Anatololacerta species complex (Squamata: Lacertidae) in the Anatolian Peninsula: Evidence from a multi-locus approach

(2015) Adriana Bellati et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hidden relationships and genetic diversity: Molecular phylogeny and phylogeography of the Levantine lizards of the genus Phoenicolacerta (Squamata: Lacertidae)

(2015) Karin Tamar et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Quartet Inference from SNP Data Under the Coalescent Model

(2014) Julia Chifman et al.   BIOINFORMATICS

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular systematics and historical biogeography of the green lizards (Lacerta) in Greece: Insights from mitochondrial and nuclear DNA

(2014) Kostas Sagonas et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Taxonomic reassessment of Blanus strauchi (Bedriaga, 1884) (Squamata: Amphisbaenia: Blanidae), with the description of a new species from south-east Anatolia (Turkey)

(2014) ROBERTO SINDACO et al.   ZOOTAXA

Multilocus species delimitation in the Crotalus triseriatus species group (Serpentes: Viperidae: Crotalinae), with the description of two new species

(2014) ROBERT JR. W. BRYSON et al.   ZOOTAXA

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

Multiple dispersal out of Anatolia: biogeography and evolution of oriental green lizards

(2013) Faraham Ahmadzadeh et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Rapid lizard radiation lacking niche conservatism: ecological diversification within a complex landscape

(2013) Faraham Ahmadzadeh et al.   JOURNAL OF BIOGEOGRAPHY

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial phylogeography, intraspecific diversity and phenotypic convergence in the four-lined snake (Reptilia, Squamata)

(2013) Panagiotis Kornilios et al.   ZOOLOGICA SCRIPTA

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Lizards as model organisms for linking phylogeographic and speciation studies

(2010) ARLEY CAMARGO et al.   MOLECULAR ECOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Fast radiation of the subfamily Lacertinae (Reptilia: Lacertidae): History or methodical artefact?

(2009) Mihaela Pavlicev et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS