tRic: a user-friendly data portal to explore the expression landscape of tRNAs in human cancers

Oncogenic lncRNA downregulates cancer cell antigen presentation and intrinsic tumor suppression

(2019) Qingsong Hu et al.   NATURE IMMUNOLOGY

The Genomic Landscape and Pharmacogenomic Interactions of Clock Genes in Cancer Chronotherapy

(2018) Youqiong Ye et al.   Cell Systems

Comprehensive Characterization of Alternative Polyadenylation in Human Cancer

(2017) Yu Xiang et al.   JNCI-Journal of the National Cancer Institute

Comprehensive Characterization of Alternative Polyadenylation in Human Cancer

(2017) Yu Xiang et al.   JNCI-Journal of the National Cancer Institute

High Throughput Sequencing of Extracellular RNA from Human Plasma

(2017) Kirsty M. Danielson et al.   PLoS One

Multi-perspective quality control of Illumina RNA sequencing data analysis

(2016) Quanhu Sheng et al.   Briefings in Functional Genomics

Modulated Expression of Specific tRNAs Drives Gene Expression and Cancer Progression

(2016) Hani Goodarzi et al.   CELL

A micro-RNA expression signature for human NAFLD progression

(2016) Yan Guo et al.   JOURNAL OF GASTROENTEROLOGY

Genome-wide profiling of transfer RNAs and their role as novel prognostic markers for breast cancer

(2016) Preethi Krishnan et al.   Scientific Reports

Why should cancer biologists care about tRNAs? tRNA synthesis, mRNA translation and the control of growth

(2015) Savraj S. Grewal   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes

(2015) Yan Guo et al.   BMC GENOMICS

ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments

(2015) Aaron E Cozen et al.   NATURE METHODS

Differential and coherent processing patterns from small RNAs

(2015) Sachin Pundhir et al.   Scientific Reports

Transfer RNAs Mediate the Rapid Adaptation of Escherichia coli to Oxidative Stress

(2015) Jiayong Zhong et al.   PLoS Genetics

A Self-defeating Anabolic Program Leads to β-Cell Apoptosis in Endoplasmic Reticulum Stress-induced Diabetes via Regulation of Amino Acid Flux

(2013) Dawid Krokowski et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Cancer Genome Atlas Pan-Cancer analysis project

(2013) John N Weinstein et al.   NATURE GENETICS

TCPA: a resource for cancer functional proteomics data

(2013) Jun Li et al.   NATURE METHODS

Depletion of Cognate Charged Transfer RNA Causes Translational Frameshifting within the Expanded CAG Stretch in Huntingtin

(2013) Hannah Girstmair et al.   Cell Reports

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data: Figure 1.

(2012) Ethan Cerami et al.   Cancer Discovery

Integrative analysis of next generation sequencing for small non-coding RNAs and transcriptional regulation in Myelodysplastic Syndromes

(2011) Dominik Beck et al.   BMC Medical Genomics

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

High levels of tRNA abundance and alteration of tRNA charging by bortezomib in multiple myeloma

(2009) Ying Zhou et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

tRNA over-expression in breast cancer and functional consequences

(2009) Mariana Pavon-Eternod et al.   NUCLEIC ACIDS RESEARCH