Mitogenomic perspectives on the origin of Tibetan loaches and their adaptation to high altitude

Evidence for Adaptation to the Tibetan Plateau Inferred from Tibetan Loach Transcriptomes

(2015) Ying Wang et al.   Genome Biology and Evolution

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Mitogenomic analyses propose positive selection in mitochondrial genes for high-altitude adaptation in galliform birds

(2014) Taicheng Zhou et al.   MITOCHONDRION

Late Miocene–Quaternary rapid stepwise uplift of the NE Tibetan Plateau and its effects on climatic and environmental changes

(2014) Jijun Li et al.   QUATERNARY RESEARCH

High altitude adaptation of the schizothoracine fishes (Cyprinidae) revealed by the mitochondrial genome analyses

(2013) Yali Li et al.   GENE

Mitochondrial DNA response to high altitude: A new perspective on high-altitude adaptation

(2013) Yongjun Luo et al.   Mitochondrial DNA

MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline

(2013) W. Iwasaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships of the Cobitoidea (Teleostei: Cypriniformes) inferred from mitochondrial and nuclear genes with analyses of gene evolution

(2012) Si-qing Liu et al.   GENE

The complete mitogenome sequence of a cave loachTriplophysa rosa(Teleostei, Balitoridae, Nemacheilinae)

(2012) Jinjin Wang et al.   Mitochondrial DNA

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation

(2011) Masanori Nakatani et al.   BMC EVOLUTIONARY BIOLOGY

Differences in mtDNA whole sequence between Tibetan and Han populations suggesting adaptive selection to high altitude

(2011) Mingliang Gu et al.   GENE

Predicting human microRNA precursors based on an optimized feature subset generated by GA–SVM

(2011) Yanqiu Wang et al.   GENOMICS

Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation

(2011) Li Yu et al.   MITOCHONDRION

Positive Darwinian Selection in the Piston That Powers Proton Pumps in Complex I of the Mitochondria of Pacific Salmon

(2011) Michael R. Garvin et al.   PLoS One

Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi)

(2011) KENJI SAITOH et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Adaptive evolution of the mitochondrial ND6 gene in the domestic horse

(2010) T. Ning et al.   GENETICS AND MOLECULAR RESEARCH

Evaluating the Roles of Energetic Functional Constraints on Teleost Mitochondrial-Encoded Protein Evolution

(2010) Yan-Bo Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Domestication Relaxed Selective Constraints on the Yak Mitochondrial Genome

(2010) Zhaofeng Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Adaptive evolution of energy metabolism genes and the origin of flight in bats

(2010) Y.-Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability

(2009) Y.-Y. Shen et al.   GENOME RESEARCH

Evolution of the Mitochondrial Genome in Mammals Living at High Altitude: New Insights from a Study of the Tribe Caprini (Bovidae, Antilopinae)

(2009) Alexandre Hassanin et al.   JOURNAL OF MOLECULAR EVOLUTION

A new Eocene catostomid (Teleostei: Cypriniformes) from northeastern China and early divergence of Catostomidae

(2009) Juan Liu et al.   Science in China. Series D, Earth sciences / Chinese Academy of Sciences

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

Mitochondrial genome analysis of Ochotona curzoniae and implication of cytochrome c oxidase in hypoxic adaptation

(2008) Yongjun Luo et al.   MITOCHONDRION

Reconstructing the phylogenetic relationships of the earth’s most diverse clade of freshwater fishes—order Cypriniformes (Actinopterygii: Ostariophysi): A case study using multiple nuclear loci and the mitochondrial genome

(2008) Richard L. Mayden et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION