Weighted Gene Co-expression Network Analysis (WGCNA) Reveals the Hub Role of Protein Ubiquitination in the Acquisition of Desiccation Tolerance in Boea hygrometrica

Acclimation-induced metabolic reprogramming contributes to rapid desiccation tolerance acquisition in Boea hygrometrica

(2018) Run-Ze Sun et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

E3 Ubiquitin Ligases: Ubiquitous Actors in Plant Development and Abiotic Stress Responses

(2017) Kai Shu et al.   PLANT AND CELL PHYSIOLOGY

Physiological and ultrastructural characterisation of a desiccation-tolerant filmy fern, Hymenophyllum caudiculatum : Influence of translational regulation and ABA on recovery

(2017) M. Garcés et al.   PLANT BIOLOGY

Desiccation tolerance in Physcomitrella patens : Rate of dehydration and the involvement of endogenous abscisic acid (ABA)

(2017) Lihong Xiao et al.   PLANT CELL AND ENVIRONMENT

Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomaeum

(2017) Robert VanBuren et al.   PLANT CELL AND ENVIRONMENT

LEA gene expression, RNA stability and pigment accumulation in three closely related Linderniaceae species differing in desiccation tolerance

(2017) Ilona Juszczak et al.   PLANT SCIENCE

HY5, a positive regulator of light signaling, negatively controls the unfolded protein response inArabidopsis

(2017) Ganesh M. Nawkar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptomic network analyses of leaf dehydration responses identify highly connected ABA and ethylene signaling hubs in three grapevine species differing in drought tolerance

(2016) Daniel W. Hopper et al.   BMC PLANT BIOLOGY

Stress-induced flowering: the third category of flowering response

(2016) Kiyotoshi Takeno   JOURNAL OF EXPERIMENTAL BOTANY

A DNA element that remembers winter

(2016) Chenlong Li et al.   NATURE GENETICS

A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis

(2016) Wenya Yuan et al.   NATURE GENETICS

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Joint genetic and network analyses identify loci associated with root growth under NaCl stress inArabidopsis thaliana

(2016) Yuriko Kobayashi et al.   PLANT CELL AND ENVIRONMENT

Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developingArabidopsis thalianaembryos

(2016) Andrew Schneider et al.   PLANT JOURNAL

Proteomes and Ubiquitylomes Analysis Reveals the Involvement of Ubiquitination in Protein Degradation in Petunias

(2016) Jianhang Guo et al.   PLANT PHYSIOLOGY

Arabidopsis transcriptional repressor VAL1 triggers Polycomb silencing at FLC during vernalization

(2016) Julia I. Qüesta et al.   SCIENCE

Metabolomic analysis reveals functional overlapping of three signal transduction proteins in regulating ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803

(2015) Ye Zhu et al.   Molecular BioSystems

Global Transcriptome Analysis Reveals Acclimation-Primed Processes Involved in the Acquisition of Desiccation Tolerance inBoea hygrometrica

(2015) Yan Zhu et al.   PLANT AND CELL PHYSIOLOGY

Functional characterization of a dehydrin protein from Fagus sylvatica seeds using experimental and in silico approaches

(2015) Ewa Marzena Kalemba et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Role of abscisic acid (ABA) in activating antioxidant tolerance responses to desiccation stress in intertidal seaweed species

(2015) Eduardo Guajardo et al.   PLANTA

A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds

(2015) Maria Cecília D. Costa et al.   PLANTA

The resurrection genome ofBoea hygrometrica: A blueprint for survival of dehydration

(2015) Lihong Xiao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In vivo spectroscopy and NMR metabolite fingerprinting approaches to connect the dynamics of photosynthetic and metabolic phenotypes in resurrection plant Haberlea rhodopensis during desiccation and recovery

(2015) Petko Mladenov et al.   Frontiers in Plant Science

Functional characterization of drought-responsive modules and genes in Oryza sativa: a network-based approach

(2015) Sanchari Sircar et al.   Frontiers in Genetics

HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings

(2014) Vijaykumar Veerappan et al.   BMC PLANT BIOLOGY

Ubiquitylation by the Ltn1 E3 ligase protects 60S ribosomes from starvation-induced selective autophagy

(2014) Batool Ossareh-Nazari et al.   JOURNAL OF CELL BIOLOGY

E3 Ubiquitin Ligase CHIP and NBR1-Mediated Selective Autophagy Protect Additively against Proteotoxicity in Plant Stress Responses

(2014) Jie Zhou et al.   PLoS Genetics

Molecular cloning and differential expression of sHSP gene family members from the resurrection plant Boea hygrometrica in response to abiotic stresses

(2013) Zhennan Zhang et al.   BIOLOGIA

LEA polypeptide profiling of recalcitrant and orthodox legume seeds reveals ABI3-regulated LEA protein abundance linked to desiccation tolerance

(2013) Julien Delahaie et al.   JOURNAL OF EXPERIMENTAL BOTANY

The riceGERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism

(2013) Xiaoli Guo et al.   PLANT JOURNAL

When Is Hub Gene Selection Better than Standard Meta-Analysis?

(2013) Peter Langfelder et al.   PLoS One

Understanding desiccation tolerance using the resurrection plant Boea hygrometrica as a model system

(2013) Jayeeta Mitra et al.   Frontiers in Plant Science

Desiccation tolerance in resurrection plants: new insights from transcriptome, proteome and metabolome analysis

(2013) Challabathula Dinakar et al.   Frontiers in Plant Science

Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks

(2013) Haiyan Jia et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Arabinose-rich polymers as an evolutionary strategy to plasticize resurrection plant cell walls against desiccation

(2012) John P. Moore et al.   PLANTA

Sugar ratios, glutathione redox status and phenols in the resurrection species Haberlea rhodopensis and the closely related non-resurrection species Chirita eberhardtii

(2011) D. Djilianov et al.   PLANT BIOLOGY

Photosynthesis in desiccation tolerant plants: Energy metabolism and antioxidative stress defense

(2011) Challabathula Dinakar et al.   PLANT SCIENCE

Weighted Gene Coexpression Network Analysis: State of the Art

(2010) Wei Zhao et al.   Journal of Biopharmaceutical Statistics

Preliminary characterization of floral response of Xerophyta humilis to desiccation, vernalisation, photoperiod and light intensity

(2010) Marleen Y. Myers et al.   PLANT GROWTH REGULATION

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

A role for a cell wall localized glycine-rich protein in dehydration and rehydration of the resurrection plantBoea hygrometrica

(2009) L. Wang et al.   PLANT BIOLOGY

Ectopic over-expression of BhHsf1, a heat shock factor from the resurrection plant Boea hygrometrica, leads to increased thermotolerance and retarded growth in transgenic Arabidopsis and tobacco

(2009) Yan Zhu et al.   PLANT MOLECULAR BIOLOGY

Towards a systems-based understanding of plant desiccation tolerance

(2009) John P. Moore et al.   TRENDS IN PLANT SCIENCE

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease

(2008) Claudine Kraft et al.   NATURE CELL BIOLOGY

Functional organization of the transcriptome in human brain

(2008) Michael C Oldham et al.   NATURE NEUROSCIENCE

Adaptations of higher plant cell walls to water loss: drought vs desiccation

(2008) John P. Moore et al.   PHYSIOLOGIA PLANTARUM

The role of protein turnover in ethylene biosynthesis and response

(2008) Christopher A. McClellan et al.   PLANT SCIENCE

LEA 4 group genes from the resurrection plant Boea hygrometrica confer dehydration tolerance in transgenic tobacco

(2008) Xia Liu et al.   PLANT SCIENCE