Joint genetic and network analyses identify loci associated with root growth under NaCl stress inArabidopsis thaliana

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis

(2015) Katherine C. H. Amrine et al.   PLoS One

The CCCH zinc finger protein gene AtZFP1 improves salt resistance in Arabidopsis thaliana

(2014) Guoliang Han et al.   PLANT MOLECULAR BIOLOGY

Natural variation in arsenate tolerance identifies an arsenate reductase in Arabidopsis thaliana

(2014) Eduardo Sánchez-Bermejo et al.   Nature Communications

STOP2 Activates Transcription of Several Genes for Al- and Low pH-Tolerance that Are Regulated by STOP1 in Arabidopsis

(2013) Yuriko Kobayashi et al.   Molecular Plant

Genome-wide association study using cellular traits identifies a new regulator of root development in Arabidopsis

(2013) Mónica Meijón et al.   NATURE GENETICS

Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening

(2013) Song Luhua et al.   PHYSIOLOGIA PLANTARUM

Rapid Structural Changes and Acidification of Guard Cell Vacuoles during Stomatal Closure Require Phosphatidylinositol 3,5-Bisphosphate

(2013) G. Bak et al.   PLANT CELL

Genome-Wide Analysis of Branched-Chain Amino Acid Levels in Arabidopsis Seeds

(2013) R. Angelovici et al.   PLANT CELL

Molecular and Physiological Analysis of Al3+ and H+ Rhizotoxicities at Moderately Acidic Conditions

(2013) Y. Kobayashi et al.   PLANT PHYSIOLOGY

A Developmental Transcriptional Network for Maize Defines Coexpression Modules

(2013) G. S. Downs et al.   PLANT PHYSIOLOGY

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel

(2012) Matthew W Horton et al.   NATURE GENETICS

Arabidopsis RABA1 GTPases are involved in transport between thetrans-Golgi network and the plasma membrane, and are required for salinity stress tolerance

(2012) Rin Asaoka et al.   PLANT JOURNAL

Conserved Non-Coding Regulatory Signatures in Arabidopsis Co-Expressed Gene Modules

(2012) Jacob B. Spangler et al.   PLoS One

Natural variation in a polyamine transporter determines paraquat tolerance in Arabidopsis

(2012) M. Fujita et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

TNO1 Is Involved in Salt Tolerance and Vacuolar Trafficking in Arabidopsis

(2011) S.-J. Kim et al.   PLANT PHYSIOLOGY

Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes

(2011) Kevin L. Childs et al.   PLoS One

Mapping Salinity Tolerance during Arabidopsis thaliana Germination and Seedling Growth

(2011) Leah DeRose-Wilson et al.   PLoS One

Arabidopsis decuple mutant reveals the importance of SnRK2 kinases in osmotic stress responses in vivo

(2011) H. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Arabidopsis AP2/ERF transcription factor RAP2.6 participates in ABA, salt and osmotic stress responses

(2010) Qiang Zhu et al.   GENE

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

RAS1, a quantitative trait locus for salt tolerance and ABA sensitivity in Arabidopsis

(2010) Z. Ren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping

(2010) A. Nemri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A domain swap approach reveals a role of the plant wall-associated kinase 1 (WAK1) as a receptor of oligogalacturonides

(2010) A. Brutus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis V-ATPase activity at the tonoplast is required for efficient nutrient storage but not for sodium accumulation

(2010) M. Krebs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Identification of Galacturonic Acid-1-phosphate Kinase, a New Member of the GHMP Kinase Superfamily in Plants, and Comparison with Galactose-1-phosphate Kinase

(2009) Ting Yang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reactive oxygen species homeostasis and signalling during drought and salinity stresses

(2009) GAD MILLER et al.   PLANT CELL AND ENVIRONMENT

Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses

(2009) K. Nakashima et al.   PLANT PHYSIOLOGY

The many functions of ERECTA

(2009) Martijn van Zanten et al.   TRENDS IN PLANT SCIENCE

A Systems Genetics Approach Implicates USF1, FADS3, and Other Causal Candidate Genes for Familial Combined Hyperlipidemia

(2009) Christopher L. Plaisier et al.   PLoS Genetics

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Overexpression of SOS (Salt Overly Sensitive) Genes Increases Salt Tolerance in Transgenic Arabidopsis

(2008) Qing Yang et al.   Molecular Plant

The DDF1 transcriptional activator upregulates expression of a gibberellin-deactivating gene,GA2ox7, under high-salinity stress in Arabidopsis

(2008) Hiroshi Magome et al.   PLANT JOURNAL

Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice

(2008) Qiuyun Wang et al.   PLANT MOLECULAR BIOLOGY

Amino Acid Polymorphisms in Strictly Conserved Domains of a P-Type ATPase HMA5 Are Involved in the Mechanism of Copper Tolerance Variation in Arabidopsis

(2008) Y. Kobayashi et al.   PLANT PHYSIOLOGY

Aluminum-tolerance QTL in Columbia/Kashmir inbred population of Arabidopsis thaliana is not associated with aluminum-responsive malate excretion

(2008) Takashi Ikka et al.   PLANT SCIENCE

Salt tolerance of Arabidopsis thaliana requires maturation of N-glycosylated proteins in the Golgi apparatus

(2008) J. S. Kang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA