Ongoing hybridization obscures phylogenetic relationships in the Drosophila subquinaria species complex

Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life

(2018) James B. Pease et al.   AMERICAN JOURNAL OF BOTANY

Evaluating genomic signatures of “the large X-effect” during complex speciation

(2018) Daven C. Presgraves   MOLECULAR ECOLOGY

Sex chromosomes and speciation

(2018) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Fine-scale geographic patterns of gene flow and reproductive character displacement in Drosophila subquinaria and Drosophila recens

(2018) Kelly A. Dyer et al.   MOLECULAR ECOLOGY

A phylogenetic examination of host use evolution in the quinaria and testacea groups of Drosophila

(2018) Clare H. Scott Chialvo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Patterns of reproductive isolation in theDrosophila subquinariacomplex: can reinforced premating isolation cascade to other species?

(2016) Devon P. Humphreys et al.   Current Zoology

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Making sense of genomic islands of differentiation in light of speciation

(2016) Jochen B. W. Wolf et al.   NATURE REVIEWS GENETICS

FlyBase at 25: looking to the future

(2016) L. Sian Gramates et al.   NUCLEIC ACIDS RESEARCH

Reticulation, divergence, and the phylogeography–phylogenetics continuum

(2016) Scott V. Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Patterns of reproductive isolation in theDrosophila subquinariacomplex: can reinforced premating isolation cascade to other species?

(2016) Devon P. Humphreys et al.   Current Zoology

Asymmetrical sexual isolation but no postmating isolation between the closely related species Drosophila suboccidentalis and Drosophila occidentalis

(2015) Nicholas J Arthur et al.   BMC EVOLUTIONARY BIOLOGY

Irrational exuberance for resolved species trees

(2015) Matthew W. Hahn et al.   EVOLUTION

The evolution of reproductive isolation in theDrosophila yakubacomplex of species

(2015) D. A. Turissini et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Reinforcement shapes clines in female mate discrimination inDrosophila subquinaria

(2014) Emily R. Bewick et al.   EVOLUTION

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

MORE ACCURATE PHYLOGENIES INFERRED FROM LOW-RECOMBINATION REGIONS IN THE PRESENCE OF INCOMPLETE LINEAGE SORTING

(2013) James B. Pease et al.   EVOLUTION

Gene flow and the maintenance of species boundaries

(2013) Erica L. Larson et al.   MOLECULAR ECOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice

(2012) Andre J. Aberer et al.   SYSTEMATIC BIOLOGY

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations

(2010) P. Beerli et al.   GENETICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments

(2009) J-F. FLOT   Molecular Ecology Resources

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

(2008) Scott V. Edwards   EVOLUTION