Depicting the Core Transcriptome Modulating Multiple Abiotic Stresses Responses in Sesame (Sesamum indicum L.)

The Role of the Late Embryogenesis-Abundant (LEA) Protein Family in Development and the Abiotic Stress Response: A Comprehensive Expression Analysis of Potato (Solanum Tuberosum)

(2019) Yongkun Chen et al.   Genes

Network hubs affect evolvability

(2019) Jana Helsen et al.   PLOS BIOLOGY

Integrative meta-analysis of transcriptomic responses to abiotic stress in cotton

(2019) Ahmad Tahmasebi et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

The genetic basis of drought tolerance in the high oil crop Sesamum indicum

(2019) Komivi Dossa et al.   PLANT BIOTECHNOLOGY JOURNAL

Bananas tackling drought and heat - with DREBs and more

(2019) Anirban Baral   PHYSIOLOGIA PLANTARUM

Transcriptome and metabolome analyses of two contrasting sesame genotypes reveal the crucial biological pathways involved in rapid adaptive response to salt stress

(2019) Yujuan Zhang et al.   BMC PLANT BIOLOGY

Abiotic and biotic stresses induce a core transcriptome response in rice

(2019) Stephen P. Cohen et al.   Scientific Reports

Co-expression modules construction by WGCNA and identify potential prognostic markers of uveal melanoma

(2018) Qi Wan et al.   EXPERIMENTAL EYE RESEARCH

Consensus co-expression networks provide insights into wild strawberry flower and fruit development

(2018) Rachel Maczis Shahan et al.   PLANT PHYSIOLOGY

Ethylene Response Factors (ERF) are differentially regulated by different abiotic stress types in tomato plants

(2018) Imen Klay et al.   PLANT SCIENCE

Glutathione S-Transferases: Role in Combating Abiotic Stresses Including Arsenic Detoxification in Plants

(2018) Smita Kumar et al.   Frontiers in Plant Science

GWAS Uncovers Differential Genetic Bases for Drought and Salt Tolerances in Sesame at the Germination Stage

(2018) Donghua Li et al.   Genes

Meta-analysis of transcriptomic responses to biotic and abiotic stress in tomato

(2018) Elham Ashrafi-Dehkordi et al.   PeerJ

Transcriptional regulation of bHLH during plant response to stress

(2018) Xi Sun et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Independent and combined abiotic stresses affect the physiology and expression patterns of DREB genes differently in stress-susceptible and resistant genotypes of banana

(2018) Bhavesh Liladhar Jangale et al.   PHYSIOLOGIA PLANTARUM

The contrasting response to drought and waterlogging is underpinned by divergent DNA methylation programs associated with transcript accumulation in sesame

(2018) Dossa Komivi et al.   PLANT SCIENCE

Candidate Biomarkers and Molecular Mechanism Investigation for Glioblastoma Multiforme Utilizing WGCNA

(2018) Qi Yang et al.   Biomed Research International

Mining Late Embryogenesis Abundant (LEA) Family Genes in Cleistogenes songorica, a Xerophyte Perennial Desert Plant

(2018) Blaise Muvunyi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

(2017) Aziz Khan et al.   NUCLEIC ACIDS RESEARCH

Alcohol dehydrogenase 1 ( ADH1 ) confers both abiotic and biotic stress resistance in Arabidopsis

(2017) Haitao Shi et al.   PLANT SCIENCE

Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis

(2017) Po-chih Shen et al.   Botanical Studies

Comparative physiological and transcriptomic analyses provide integrated insight into osmotic, cold and salt stress tolerance mechanisms in banana

(2017) Wei Hu et al.   Scientific Reports

Transcriptomic, biochemical and physio-anatomical investigations shed more light on responses to drought stress in two contrasting sesame genotypes

(2017) Komivi Dossa et al.   Scientific Reports

Genome-Wide Identification, Characterization, and Stress-Responsive Expression Profiling of Genes Encoding LEA (Late Embryogenesis Abundant) Proteins in Moso Bamboo (Phyllostachys edulis)

(2016) Zhuo Huang et al.   PLoS One

Overexpression of a Cytosolic Abiotic Stress Responsive Universal Stress Protein (SbUSP) Mitigates Salt and Osmotic Stress in Transgenic Tobacco Plants

(2016) Pushpika Udawat et al.   Frontiers in Plant Science

WRKY Transcription Factors: Molecular Regulation and Stress Responses in Plants

(2016) Ujjal J. Phukan et al.   Frontiers in Plant Science

Tolerant and Susceptible Sesame Genotypes Reveal Waterlogging Stress Response Patterns

(2016) Linhai Wang et al.   PLoS One

Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach

(2015) Lidor Shaar-Moshe et al.   BMC PLANT BIOLOGY

MYB transcription factors, active players in abiotic stress signaling

(2015) Chaonan Li et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

The sunflower transcription factor HaWRKY76 confers drought and flood tolerance to Arabidopsis thaliana plants without yield penalty

(2015) Jesica Raineri et al.   PLANT CELL REPORTS

Ethylene Response Factors: A Key Regulatory Hub in Hormone and Stress Signaling

(2015) Maren Müller et al.   PLANT PHYSIOLOGY

Drought stress responses in crops

(2014) Arun K. Shanker et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A wheat aminocyclopropane-1-carboxylate oxidase gene, TaACO1, negatively regulates salinity stress in Arabidopsis thaliana

(2014) Donghua Chen et al.   PLANT CELL REPORTS

Hydrogen peroxide controls transcriptional responses of ERF73/HRE1 and ADH1 via modulation of ethylene signaling during hypoxic stress

(2014) Chin-Ying Yang   PLANTA

Analysis of Global Gene Expression in Brachypodium distachyon Reveals Extensive Network Plasticity in Response to Abiotic Stress

(2014) Henry D. Priest et al.   PLoS One

Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis

(2014) Linhai Wang et al.   GENOME BIOLOGY

Heme oxygenase 1 and abiotic stresses in plants

(2013) Huyi He et al.   ACTA PHYSIOLOGIAE PLANTARUM

Plant Core Environmental Stress Response Genes Are Systemically Coordinated during Abiotic Stresses

(2013) Achim Hahn et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A Developmental Transcriptional Network for Maize Defines Coexpression Modules

(2013) G. S. Downs et al.   PLANT PHYSIOLOGY

Transcriptome Analysis Reveals Crosstalk of Responsive Genes to Multiple Abiotic Stresses in Cotton (Gossypium hirsutum L.)

(2013) Ya-Na Zhu et al.   PLoS One

1-Aminocyclopropane-1-carboxylic acid as a signalling molecule in plants

(2013) G. M. Yoon et al.   AoB Plants

The interaction of plant biotic and abiotic stresses: from genes to the field

(2012) N. J. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

The core regulation module of stress-responsive regulatory networks in yeast

(2012) Dongsan Kim et al.   NUCLEIC ACIDS RESEARCH

Comprehensive literature review and statistical considerations for microarray meta-analysis

(2012) George C. Tseng et al.   NUCLEIC ACIDS RESEARCH

Differential Gene Expression in Soybean Leaf Tissues at Late Developmental Stages under Drought Stress Revealed by Genome-Wide Transcriptome Analysis

(2012) Dung Tien Le et al.   PLoS One

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Implications of climate change for diseases, crop yields and food security

(2011) Adrian C. Newton et al.   EUPHYTICA

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Independent and Combined Effects of High Temperature and Drought Stress During Grain Filling on Plant Yield and Chloroplast EF-Tu Expression in Spring Wheat

(2011) P. V. V. Prasad et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Solutions for a cultivated planet

(2011) Jonathan A. Foley et al.   NATURE

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max

(2011) DAVID J. WESTON et al.   PLANT CELL AND ENVIRONMENT

Drought and Salt Stress Tolerance of an Arabidopsis Glutathione S-Transferase U17 Knockout Mutant Are Attributed to the Combined Effect of Glutathione and Abscisic Acid

(2011) J.-H. Chen et al.   PLANT PHYSIOLOGY

Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes

(2011) Kevin L. Childs et al.   PLoS One

Transcriptome Analysis of High-Temperature Stress in Developing Barley Caryopses: Early Stress Responses and Effects on Storage Compound Biosynthesis

(2010) Elke Mangelsen et al.   Molecular Plant

Functional Analysis of the Group 4 Late Embryogenesis Abundant Proteins Reveals Their Relevance in the Adaptive Response during Water Deficit in Arabidopsis

(2010) Yadira Olvera-Carrillo et al.   PLANT PHYSIOLOGY

Expression of ethylene response factor JERF1 in rice improves tolerance to drought

(2010) Zhijin Zhang et al.   PLANTA

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

Identification of gene co-regulatory modules and associated cis-elements involved in degenerative heart disease

(2009) Charles G Danko et al.   BMC Medical Genomics

Isolation and functional analysis of cotton universal stress protein promoter in response to phytohormones and abiotic stresses

(2009) Muzna Zahur et al.   MOLECULAR BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Comparison of the transcriptomic "stress response" evoked by antimycin A and oxygen deprivation in saccharomyces cerevisiae

(2008) Liang-Chuan Lai et al.   BMC GENOMICS

Genetic approaches to crop improvement: responding to environmental and population changes

(2008) Shin Takeda et al.   NATURE REVIEWS GENETICS

Breeding for abiotic stresses for sustainable agriculture

(2007) J.R Witcombe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES