Analysis of Global Gene Expression in Brachypodium distachyon Reveals Extensive Network Plasticity in Response to Abiotic Stress

DNA-methylation changes induced by salt stress in wheat Triticum aestivum

(2016) Zhong Lan et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study

(2013) F Feltus et al.   BMC Systems Biology

Structure, Function and Networks of Transcription Factors Involved in Abiotic Stress Responses

(2013) Søren Lindemose et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Stress-Mediated Alterations in Chromatin Architecture Correlate with Down-Regulation of a Gene Encoding 60S rpL32 in Rice

(2013) Pradipto Mukhopadhyay et al.   PLANT AND CELL PHYSIOLOGY

Coexpression network analysis associated with call of rice seedlings for encountering heat stress

(2013) Neelam K. Sarkar et al.   PLANT MOLECULAR BIOLOGY

Arabidopsis ubiquitin ligase MIEL1 mediates degradation of the transcription factor MYB30 weakening plant defence

(2013) Daniel Marino et al.   Nature Communications

Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses

(2012) Chuan Li et al.   BMC PLANT BIOLOGY

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Epigenetic control of gene regulation in plants

(2011) Massimiliano Lauria et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Transcriptional responses of winter barley to cold indicate nucleosome remodelling as a specific feature of crown tissues

(2011) Anna Janská et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Global Landscape of a Co-Expressed Gene Network in Barley and its Application to Gene Discovery in Triticeae Crops

(2011) Keiichi Mochida et al.   PLANT AND CELL PHYSIOLOGY

Mutations in MYB3R1 and MYB3R4 Cause Pleiotropic Developmental Defects and Preferential Down-Regulation of Multiple G2/M-Specific Genes in Arabidopsis

(2011) N. Haga et al.   PLANT PHYSIOLOGY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

A stress-free walk from Arabidopsis to crops

(2010) Yin Hoon Chew et al.   CURRENT OPINION IN BIOTECHNOLOGY

Plant physiology and proteomics reveals the leaf response to drought in alfalfa (Medicago sativa L.)

(2010) Iker Aranjuelo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Plant responses to cold: transcriptome analysis of wheat

(2010) Mark O. Winfield et al.   PLANT BIOTECHNOLOGY JOURNAL

Research on plant abiotic stress responses in the post-genome era: past, present and future

(2010) Takashi Hirayama et al.   PLANT JOURNAL

Linking the Salt Transcriptome with Physiological Responses of a Salt-Resistant Populus Species as a Strategy to Identify Genes Important for Stress Acclimation

(2010) M. Brinker et al.   PLANT PHYSIOLOGY

Freezing Tolerance in Plants Requires Lipid Remodeling at the Outer Chloroplast Membrane

(2010) Eric R. Moellering et al.   SCIENCE

Gene regulation by nucleosome positioning

(2010) Lu Bai et al.   TRENDS IN GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Altered expression of pyrophosphate: Fructose-6-phosphate 1-phosphotransferase affects the growth of transgenic Arabidopsis plants

(2009) Hyemin Lim et al.   MOLECULES AND CELLS

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Roles for Arabidopsis CAMTA Transcription Factors in Cold-Regulated Gene Expression and Freezing Tolerance

(2009) C. J. Doherty et al.   PLANT CELL

Stress-induced changes in theArabidopsis thalianatranscriptome analyzed using whole-genome tiling arrays

(2009) Georg Zeller et al.   PLANT JOURNAL

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Heat stress-responsive transcriptome analysis in heat susceptible and tolerant wheat (Triticum aestivum L.) by using Wheat Genome Array

(2008) Dandan Qin et al.   BMC GENOMICS

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules

(2008) Todd P. Michael et al.   PLoS Genetics

Breeding for abiotic stresses for sustainable agriculture

(2007) J.R Witcombe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES