Gene Flow in the Müllerian Mimicry Ring of a Poisonous Papuan Songbird Clade (Pitohui; Aves)

Complete subspecies-level phylogeny of the Oriolidae (Aves: Passeriformes): Out of Australasia and return

(2019) Knud Andreas Jønsson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reconstructing the Evolutionary History of Powdery Mildew Lineages (Blumeria graminis) at Different Evolutionary Time Scales with NGS Data

(2017) Fabrizio Menardo et al.   Genome Biology and Evolution

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

The effects of Pleistocene climate change on biotic differentiation in a montane songbird clade from Wallacea

(2017) Nathaniel S.R. Ng et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Avian introgression in the genomic era

(2017) Jente Ottenburghs et al.   Avian Research

Complex modular architecture around a simple toolkit of wing pattern genes

(2017) Steven M. Van Belleghem et al.   Nature Ecology & Evolution

Direct estimate of the rate of germline mutation in a bird

(2016) Linnéa Smeds et al.   GENOME RESEARCH

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Mutations in different pigmentation genes are associated with parallel melanism in island flycatchers

(2016) J. Albert C. Uy et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Beyond the Coral Triangle: high genetic diversity and near panmixia in Singapore's populations of the broadcast spawning sea starProtoreaster nodosus

(2016) Y. C. Tay et al.   Royal Society Open Science

The Functional Basis of Wing Patterning in Heliconius Butterflies: The Molecules Behind Mimicry

(2015) M. R. Kronforst et al.   GENETICS

Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data

(2015) Alexander Nater et al.   SYSTEMATIC BIOLOGY

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

Effect of forest fragmentation on bird species richness in Papua New Guinea

(2014) Katerina Sam et al.   JOURNAL OF FIELD ORNITHOLOGY

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient homology underlies adaptive mimetic diversity across butterflies

(2014) Jason R. Gallant et al.   Nature Communications

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Do Heliconius butterfly species exchange mimicry alleles?

(2013) J. Smith et al.   Biology Letters

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Repeated evolution in overlapping mimicry rings among North American velvet ants

(2012) Joseph S. Wilson et al.   Nature Communications

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

(2012) Carolina Pardo-Diaz et al.   PLoS Genetics

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

Deciphering the pecking order of HCN4 expression in the developing heart: Lessons from chicken

(2011) Danshi Li et al.   HEART RHYTHM

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

CONSERVATIVE COEVOLUTION OF MÜLLERIAN MIMICRY IN A GROUP OF RIFT LAKE CATFISH

(2010) Jeremy J. Wright   EVOLUTION

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Vertebrate pigmentation: from underlying genes to adaptive function

(2010) Joanna K. Hubbard et al.   TRENDS IN GENETICS

Skin as a Toxin Storage Organ in the Endemic New Guinean GenusPitohui

(2009) John P. Dumbacher et al.   AUK

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Müllerian Mimicry: Sharing the Load Reduces the Legwork

(2009) Richard M. Merrill et al.   CURRENT BIOLOGY

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Phylogeny of the avian genus Pitohui and the evolution of toxicity in birds

(2008) J DUMBACHER et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The evolution of Müllerian mimicry

(2008) Thomas N. Sherratt   NATURWISSENSCHAFTEN

Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids

(2008) E. Lyons et al.   PLANT PHYSIOLOGY

Polyphyletic origin of toxic Pitohui birds suggests widespread occurrence of toxicity in corvoid birds

(2007) K. A Jonsson et al.   Biology Letters