Diversity and functional profile of bacterial communities at Lancaster acid mine drainage dam, South Africa as revealed by 16S rRNA gene high-throughput sequencing analysis

Diversity of Prokaryotic Communities Indigenous to Acid Mine Drainage and Related Rocks from Baiyin Open-Pit Copper Mine Stope, China

(2018) Wasim Sajjad et al.   GEOMICROBIOLOGY JOURNAL

Defunct gold mine tailings are natural reservoir for unique bacterial communities revealed by high-throughput sequencing analysis

(2018) Timothy Sibanda et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Significant seasonal variations of microbial community in an acid mine drainage lake in Anhui Province, China

(2017) Chunbo Hao et al.   ENVIRONMENTAL POLLUTION

Bacterial, Archaeal, and Eukaryotic Diversity across Distinct Microhabitats in an Acid Mine Drainage

(2017) Victoria Mesa et al.   Frontiers in Microbiology

Microbial profiling of South African acid mine water samples using next generation sequencing platform

(2016) I. Kamika et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of the microbial community composition and the distribution of Fe-metabolizing bacteria in a creek contaminated by acid mine drainage

(2016) Weimin Sun et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions

(2016) Martha Zakrzewski et al.   BIOINFORMATICS

Microbial communities, processes and functions in acid mine drainage ecosystems

(2016) Lin-xing Chen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Predicting taxonomic and functional structure of microbial communities in acid mine drainage

(2016) Jialiang Kuang et al.   ISME Journal

Substantial Variability of Multiple Microbial Communities Collected at Similar Acidic Mine Water Outlets

(2016) Lukáš Falteisek et al.   MICROBIAL ECOLOGY

Microbial Ecology and Evolution in the Acid Mine Drainage Model System

(2016) Li-Nan Huang et al.   TRENDS IN MICROBIOLOGY

Diversity of the Sediment Microbial Community in the Aha Watershed (Southwest China) in Response to Acid Mine Drainage Pollution Gradients

(2015) Weimin Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage

(2015) Yun Kit Yeoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Microbial diversity and metabolic networks in acid mine drainage habitats

(2015) Celia Méndez-García et al.   Frontiers in Microbiology

Correlating Microbial Diversity Patterns with Geochemistry in an Extreme and Heterogeneous Environment of Mine Tailings

(2014) Jun Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Profile of bacterial communities in South African mine-water samples using Illumina next-generation sequencing platform

(2014) Jitendra Keshri et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Response of Soil-Associated Microbial Communities to Intrusion of Coal Mine-Derived Acid Mine Drainage

(2014) Justin S. Brantner et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Diversity and spatiotemporal dynamics of bacterial communities: physicochemical and other drivers along an acid mine drainage

(2014) Aurélie Volant et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

(2014) Celia Méndez-García et al.   ISME Journal

Microbial Diversity of Emalahleni Mine Water in South Africa and Tolerance Ability of the Predominant Organism to Vanadium and Nickel

(2014) Ilunga Kamika et al.   PLoS One

Microorganisms in subterranean acidic waters within Europe's deepest metal mine

(2014) Catherine M. Kay et al.   RESEARCH IN MICROBIOLOGY

Archaeal and bacterial communities in acid mine drainage from metal-rich abandoned tailing ponds, Tongling, China

(2014) Yang YANG et al.   TRANSACTIONS OF NONFERROUS METALS SOCIETY OF CHINA

Insights into the distribution and abundance of the ubiquitous Candidatus Saccharibacteria phylum following tag pyrosequencing

(2014) Belinda Ferrari et al.   Scientific Reports

The ecological controls on the prevalence of candidate division TM7 in polar regions

(2014) Tristrom J. Winsley et al.   Frontiers in Microbiology

Metal resistance or tolerance? Acidophiles confront high metal loads via both abiotic and biotic mechanisms

(2014) Mark Dopson et al.   Frontiers in Microbiology

Depth-dependent geochemical and microbiological gradients in Fe(III) deposits resulting from coal mine-derived acid mine drainage

(2014) Justin S. Brantner et al.   Frontiers in Microbiology

New insights into the biogeochemistry of extremely acidic environments revealed by a combined cultivation-based and culture-independent study of two stratified pit lakes

(2013) Carmen Falagán et al.   FEMS MICROBIOLOGY ECOLOGY

Characterization of the microbial acid mine drainage microbial community using culturing and direct sequencing techniques

(2013) Ryan R. Auld et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Distribution of Microbial Arsenic Reduction, Oxidation and Extrusion Genes along a Wide Range of Environmental Arsenic Concentrations

(2013) Lorena V. Escudero et al.   PLoS One

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

(2013) J. S. McLean et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolites Associated with Adaptation of Microorganisms to an Acidophilic, Metal-Rich Environment Identified by Stable-Isotope-Enabled Metabolomics

(2013) A. C. Mosier et al.   mBio

Novel High-Rank Phylogenetic Lineages within a Sulfur Spring (Zodletone Spring, Oklahoma), Revealed Using a Combined Pyrosequencing-Sanger Approach

(2012) Noha Youssef et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative microbial ecology study of the sediments and the water column of the Río Tinto, an extreme acidic environment

(2012) Antonio García-Moyano et al.   FEMS MICROBIOLOGY ECOLOGY

Microbial Community Composition in Acid Mine Drainage Lake of Xiang Mountain Sulfide Mine in Anhui Province, China

(2012) Chunbo Hao et al.   GEOMICROBIOLOGY JOURNAL

Metallibacterium scheffleri gen. nov., sp. nov., an alkalinizing gammaproteobacterium isolated from an acidic biofilm

(2012) S. Ziegler et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

(2012) Jia-Liang Kuang et al.   ISME Journal

Environmental microbiology through the lens of high-throughput DNA sequencing: Synopsis of current platforms and bioinformatics approaches

(2012) Ramiro Logares et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The chemical composition and bacteria communities in acid and metalliferous drainage from the wet–dry tropics are dependent on season

(2012) Claire Streten-Joyce et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Microbial Diversity in Anaerobic Sediments at Río Tinto, a Naturally Acidic Environment with a High Heavy Metal Content

(2011) Irene Sánchez-Andrea et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Methanogenesis in the sediments of Rio Tinto, an extreme acidic river

(2011) José L. Sanz et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

(2011) Etienne Yergeau et al.   ISME Journal

Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities

(2011) Curt R. Fischer et al.   Metabolomics

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial diversity in acid mine drainage of Xiang Mountain sulfide mine, Anhui Province, China

(2010) Chunbo Hao et al.   EXTREMOPHILES

New perspectives in acid mine drainage microbiology

(2010) K.B. Hallberg   HYDROMETALLURGY

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature

(2010) Vincent J Denef et al.   ISME Journal

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations

(2009) R. D. Barabote et al.   GENOME RESEARCH

The relative contribution of human cytochrome P450 isoforms to the four caffeine oxidation pathways: An in vitro comparative study with cDNA-expressed P450s including CYP2C isoforms

(2008) Marta Kot et al.   BIOCHEMICAL PHARMACOLOGY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH