Diversity of Prokaryotic Communities Indigenous to Acid Mine Drainage and Related Rocks from Baiyin Open-Pit Copper Mine Stope, China

Bacterial and eukaryal diversity in soils forming from acid mine drainage precipitates under reclaimed vegetation and biological crusts

(2016) Claudia Rojas et al.   APPLIED SOIL ECOLOGY

Metagenome-scale analysis yields insights into the structure and function of microbial communities in a copper bioleaching heap

(2016) Xian Zhang et al.   BMC GENETICS

Microbial communities, processes and functions in acid mine drainage ecosystems

(2016) Lin-xing Chen et al.   CURRENT OPINION IN BIOTECHNOLOGY

Acidithiobacillus ferriphilus sp. nov., a facultatively anaerobic iron- and sulfur-metabolizing extreme acidophile

(2016) Carmen Falagán et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Acidithrix ferrooxidans gen. nov., sp. nov.; a filamentous and obligately heterotrophic, acidophilic member of the Actinobacteria that catalyzes dissimilatory oxido-reduction of iron

(2015) Rose M. Jones et al.   RESEARCH IN MICROBIOLOGY

Insights from the Metagenome of an Acid Salt Lake: The Role of Biology in an Extreme Depositional Environment

(2015) Sarah Stewart Johnson et al.   PLoS One

15N- and2H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity

(2014) Nicholas B. Justice et al.   ENVIRONMENTAL MICROBIOLOGY

Biogeochemical Processes Governing Natural Pyrite Oxidation and Release of Acid Metalliferous Drainage

(2014) Ya-ting Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Acidibacter ferrireducens gen. nov., sp. nov.: an acidophilic ferric iron-reducing gammaproteobacterium

(2014) Carmen Falagán et al.   EXTREMOPHILES

Diversity and spatiotemporal dynamics of bacterial communities: physicochemical and other drivers along an acid mine drainage

(2014) Aurélie Volant et al.   FEMS MICROBIOLOGY ECOLOGY

Comparative metagenomic and metatranscriptomic analyses of microbial communities in acid mine drainage

(2014) Lin-xing Chen et al.   ISME Journal

Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics

(2014) Zheng-Shuang Hua et al.   ISME Journal

Community transcriptomics reveals unexpected high microbial diversity in acidophilic biofilm communities

(2014) Daniela S Aliaga Goltsman et al.   ISME Journal

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

(2014) Celia Méndez-García et al.   ISME Journal

Acidophilic Green Alga Pseudochlorella sp. YKT1 Accumulates High Amount of Lipid Droplets under a Nitrogen-Depleted Condition at a Low-pH

(2014) Shunsuke Hirooka et al.   PLoS One

New Group in the Leptospirillum Clade: Cultivation-Independent Community Genomics, Proteomics, and Transcriptomics of the New Species “Leptospirillum Group IV UBA BS”

(2013) Daniela S. Aliaga Goltsman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea

(2013) Alexis P Yelton et al.   BMC GENOMICS

Comparison of microbial diversity determined with the same variable tag sequence extracted from two different PCR amplicons

(2013) Yan He et al.   BMC MICROBIOLOGY

Shifts in microbial community composition and function in the acidification of a lead/zinc mine tailings

(2013) Lin-xing Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Proposal for a new class within the phylum Proteobacteria, Acidithiobacillia classis nov., with the type order Acidithiobacillales, and emended description of the class Gammaproteobacteria

(2013) K. P. Williams et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Acidithiobacillus ferridurans sp. nov., an acidophilic iron-, sulfur- and hydrogen-metabolizing chemolithotrophic gammaproteobacterium

(2013) S. Hedrich et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Oxygen-dependent niche formation of a pyrite-dependent acidophilic consortium built by archaea and bacteria

(2013) Sibylle Ziegler et al.   ISME Journal

Surprising abundance of Gallionella-related iron oxidizers in creek sediments at pH 4.4 or at high heavy metal concentrations

(2013) Maria Fabisch et al.   Frontiers in Microbiology

Next-Generation Sequencing of Microbial Communities in the Athabasca River and Its Tributaries in Relation to Oil Sands Mining Activities

(2012) Etienne Yergeau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

(2012) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantification of Tinto River Sediment Microbial Communities: Importance of Sulfate-Reducing Bacteria and Their Role in Attenuating Acid Mine Drainage

(2012) Irene Sánchez-Andrea et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biodiversity, metabolism and applications of acidophilic sulfur-metabolizing microorganisms

(2012) Mark Dopson et al.   ENVIRONMENTAL MICROBIOLOGY

Archaeal diversity: temporal variation in the arsenic-rich creek sediments of Carnoulès Mine, France

(2012) A. Volant et al.   EXTREMOPHILES

Three-year survey of sulfate-reducing bacteria community structure in Carnoulès acid mine drainage (France), highly contaminated by arsenic

(2012) Ludovic Giloteaux et al.   FEMS MICROBIOLOGY ECOLOGY

Metallibacterium scheffleri gen. nov., sp. nov., an alkalinizing gammaproteobacterium isolated from an acidic biofilm

(2012) S. Ziegler et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

(2012) Jia-Liang Kuang et al.   ISME Journal

Draft Genome Sequence of the Sulfobacillus thermosulfidooxidans Cutipay Strain, an Indigenous Bacterium Isolated from a Naturally Extreme Mining Environment in Northern Chile

(2012) D. Travisany et al.   JOURNAL OF BACTERIOLOGY

The chemical composition and bacteria communities in acid and metalliferous drainage from the wet–dry tropics are dependent on season

(2012) Claire Streten-Joyce et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NALT)

(2012) Iain Anderson et al.   Standards in Genomic Sciences

Redox Transformations of Iron at Extremely Low pH: Fundamental and Applied Aspects

(2012) D. Barrie Johnson et al.   Frontiers in Microbiology

Environmental, Biogeographic, and Biochemical Patterns of Archaea of the Family Ferroplasmaceae

(2011) Olga V. Golyshina   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial and Temporal Analysis of the Microbial Community in the Tailings of a Pb-Zn Mine Generating Acidic Drainage

(2011) Li-Nan Huang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Geomicrobiology of La Zarza-Perrunal Acid Mine Effluent (Iberian Pyritic Belt, Spain)

(2011) Elena González-Toril et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial Diversity in Anaerobic Sediments at Río Tinto, a Naturally Acidic Environment with a High Heavy Metal Content

(2011) Irene Sánchez-Andrea et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The co-culture of Acidithiobacillus ferrooxidans and Acidiphilium acidophilum enhances the growth, iron oxidation, and CO2 fixation

(2011) Hongwei Liu et al.   ARCHIVES OF MICROBIOLOGY

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments

(2011) Violaine Bonnefoy et al.   ENVIRONMENTAL MICROBIOLOGY

Methanogenesis in the sediments of Rio Tinto, an extreme acidic river

(2011) José L. Sanz et al.   ENVIRONMENTAL MICROBIOLOGY

Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing

(2011) Sébastien Monchy et al.   ENVIRONMENTAL MICROBIOLOGY

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community

(2011) Ryan S. Mueller et al.   ENVIRONMENTAL MICROBIOLOGY

Reproducibility and quantitation of amplicon sequencing-based detection

(2011) Jizhong Zhou et al.   ISME Journal

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Diversity of Dissimilatory Sulfite Reductase Genes (dsrAB) in a Salt Marsh Impacted by Long-Term Acid Mine Drainage

(2010) J. W. Moreau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method

(2010) Jin-Ya Wu et al.   BMC MICROBIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

New perspectives in acid mine drainage microbiology

(2010) K.B. Hallberg   HYDROMETALLURGY

The biogeochemistry and microbiology of sulfidic mine waste and bioleaching dumps and heaps, and novel Fe(II)-oxidizing bacteria

(2010) A. Schippers et al.   HYDROMETALLURGY

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature

(2010) Vincent J Denef et al.   ISME Journal

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bar-Coded Pyrosequencing Reveals Shared Bacterial Community Properties along the Temperature Gradients of Two Alkaline Hot Springs in Yellowstone National Park

(2009) S. R. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biofilm Bacterial Community Structure in Streams Affected by Acid Mine Drainage

(2009) G. Lear et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) Bacteria in Acid Mine Drainage Biofilms

(2009) D. S. A. Goltsman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

(2009) Jorge Valdés et al.   BMC GENOMICS

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

(2009) Julie A. Huber et al.   ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonal and spatial variations in microbial community structure and diversity in the acid stream draining across an ongoing surface mining site

(2009) Gui-Liang Tan et al.   FEMS MICROBIOLOGY ECOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

The 'rare biosphere': a reality check

(2009) Jens Reeder et al.   NATURE METHODS

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Ecology of the rare microbial biosphere of the Arctic Ocean

(2009) Pierre E. Galand et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative Microbial Community Analysis of Three Different Sulfidic Mine Tailing Dumps Generating Acid Mine Drainage

(2008) D. Kock et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of bacterial communities in acid mine drainage from the Shen-bu copper mine, Gansu province, China

(2008) Yu Yang et al.   ELECTRONIC JOURNAL OF BIOTECHNOLOGY

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community diversity and changes associated with a mine drainage gradient at the Dexing copper mine, China

(2007) H Yin et al.   AQUATIC MICROBIAL ECOLOGY