TASUKE+: a web-based platform for exploring genome-wide association studies results and large-scale resequencing data

Rice Galaxy: an open resource for plant science

(2019) Venice Juanillas et al.   GigaScience

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019

(2018) Annalisa Buniello et al.   NUCLEIC ACIDS RESEARCH

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog

(2017) Matteo Togninalli et al.   NUCLEIC ACIDS RESEARCH

Genome-wide association study for 13 agronomic traits reveals distribution of superior alleles in bread wheat from the Yellow and Huai Valley of China

(2017) Congwei Sun et al.   PLANT BIOTECHNOLOGY JOURNAL

CNV-association meta-analysis in 191,161 European adults reveals new loci associated with anthropometric traits

(2017) Aurélien Macé et al.   Nature Communications

Construction of the third-generation Zea mays haplotype map

(2017) Robert Bukowski et al.   GigaScience

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana

(2016) Carlos Alonso-Blanco et al.   CELL

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

(2016) Kenji Yano et al.   NATURE GENETICS

easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies

(2016) Dominik G. Grimm et al.   PLANT CELL

Open access resources for genome-wide association mapping in rice

(2016) Susan R. McCouch et al.   Nature Communications

LocusExplorer: a user-friendly tool for integrated visualization of human genetic association data and biological annotations

(2015) Tokhir Dadaev et al.   BIOINFORMATICS

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive Information Resource for Marker Assisted Selection

(2015) Jorge Duitama et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize

(2014) Jason G. Wallace et al.   PLoS Genetics

The 3,000 rice genomes project

(2014)   GigaScience

TASUKE: a web-based visualization program for large-scale resequencing data

(2013) M. Kumagai et al.   BIOINFORMATICS

Sequencing-based genome-wide association study in rice

(2013) Bin Han et al.   CURRENT OPINION IN PLANT BIOLOGY

Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics

(2013) Hiroaki Sakai et al.   PLANT AND CELL PHYSIOLOGY

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

MFEprimer-2.0: a fast thermodynamics-based program for checking PCR primer specificity

(2012) Wubin Qu et al.   NUCLEIC ACIDS RESEARCH

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Matapax: An Online High-Throughput Genome-Wide Association Study Pipeline

(2012) L. H. Childs et al.   PLANT PHYSIOLOGY

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Fast, Powerful Method for Detecting Identity by Descent

(2011) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population

(2011) Kristen L Kump et al.   NATURE GENETICS

FaST linear mixed models for genome-wide association studies

(2011) Christoph Lippert et al.   NATURE METHODS

LocusZoom: regional visualization of genome-wide association scan results

(2010) R. J. Pruim et al.   BIOINFORMATICS

SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study

(2010) S. F. Saccone et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS