Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis
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Title
Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis
Authors
Keywords
Chilling stress tolerance transcripts, Rice cold stress transcriptome analysis, RNA-seq seedling stage cold tolerance, Cold-transcription factor genes, Gene ontology, KEGG pathway analysis
Journal
BMC PLANT BIOLOGY
Volume 19, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-08-14
DOI
10.1186/s12870-019-1922-8
References
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- (2017) Elssa Pandit et al. Frontiers in Plant Science
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- (2016) Hongyan Wang et al. Frontiers in Plant Science
- Population Structure, Genetic Diversity and Molecular Marker-Trait Association Analysis for High Temperature Stress Tolerance in Rice
- (2016) Sharat Kumar Pradhan et al. PLoS One
- Screening and classification of genotypes for seedling-stage chilling stress tolerance in rice and validation of the trait using SSR markers
- (2015) S. K. Pradhan et al. Plant Genetic Resources-Characterization and Utilization
- Screening and classification of genotypes for seedling-stage chilling stress tolerance in rice and validation of the trait using SSR markers
- (2015) S. K. Pradhan et al. Plant Genetic Resources-Characterization and Utilization
- Transcriptome analysis of rice root heterosis by RNA-Seq
- (2013) Rongrong Zhai et al. BMC GENOMICS
- STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice
- (2013) Mahantesha Naika et al. PLANT AND CELL PHYSIOLOGY
- The Low Temperature Induced Physiological Responses ofAvena nudaL., a Cold-Tolerant Plant Species
- (2013) Wenying Liu et al. TheScientificWorldJOURNAL
- Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection
- (2012) Bala R Thumma et al. BMC GENOMICS
- Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background
- (2012) Fan Zhang et al. BMC GENOMICS
- Transcriptome analysis of rice root responses to potassium deficiency
- (2012) Tian-Li Ma et al. BMC PLANT BIOLOGY
- Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing
- (2012) T. Kyndt et al. JOURNAL OF EXPERIMENTAL BOTANY
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac
- (2012) YONG HU et al. PLANT CELL AND ENVIRONMENT
- Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes
- (2012) Ting Zhang et al. PLoS One
- Genome-Wide Transcriptional Profiles during Temperature and Oxidative Stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice
- (2012) Dheeraj Mittal et al. PLoS One
- Temperature stress differentially modulates transcription in meiotic anthers of heat-tolerant and heat-sensitive tomato plants
- (2011) Craita E Bita et al. BMC GENOMICS
- mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress
- (2011) Youko Oono et al. Rice
- Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress
- (2010) Sonali Dubey et al. BMC GENOMICS
- Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress
- (2010) Kil-Young Yun et al. BMC PLANT BIOLOGY
- CBF-dependent signaling pathway: A key responder to low temperature stress in plants
- (2010) M.Q. Zhou et al. CRITICAL REVIEWS IN BIOTECHNOLOGY
- Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
- (2010) T. Lu et al. GENOME RESEARCH
- Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice
- (2010) Akhter Most Sharoni et al. PLANT AND CELL PHYSIOLOGY
- Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids
- (2010) G. He et al. PLANT CELL
- A Novel MYBS3-Dependent Pathway Confers Cold Tolerance in Rice
- (2010) C. F. Su et al. PLANT PHYSIOLOGY
- Characterization of WRKY co-regulatory networks in rice and Arabidopsis
- (2009) Stefano Berri et al. BMC PLANT BIOLOGY
- Transcriptional profiling of maturing tomato (Solanum lycopersicum L.) microspores reveals the involvement of heat shock proteins, ROS scavengers, hormones, and sugars in the heat stress response
- (2009) Gil Frank et al. JOURNAL OF EXPERIMENTAL BOTANY
- Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses
- (2009) K. Nakashima et al. PLANT PHYSIOLOGY
- Heat shock factor gene family in rice: Genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses
- (2009) Dheeraj Mittal et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- A transcriptomic analysis of superhybrid rice LYP9 and its parents
- (2009) G. Wei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Medium- and short-chain dehydrogenase/reductase gene and protein families
- (2008) K. L. Kavanagh et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Trehalose Biosynthesis in Response to Abiotic Stresses
- (2008) Mihaela Iordachescu et al. Journal of Integrative Plant Biology
- Reactive oxygen signaling and abiotic stress
- (2008) Gad Miller et al. PHYSIOLOGIA PLANTARUM
- A Comprehensive Transcriptional Profiling of the WRKY Gene Family in Rice Under Various Abiotic and Phytohormone Treatments
- (2008) Rengasamy Ramamoorthy et al. PLANT AND CELL PHYSIOLOGY
- Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses
- (2008) PRAGYA KANT et al. PLANT CELL AND ENVIRONMENT
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