mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.)

(2010) Hiroshi Mizuno et al.   BMC GENOMICS

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

RNase T2 genes from rice and the evolution of secretory ribonucleases in plants

(2010) Gustavo C. MacIntosh et al.   MOLECULAR GENETICS AND GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

A Central Regulatory System Largely Controls Transcriptional Activation and Repression Responses to Phosphate Starvation in Arabidopsis

(2010) Regla Bustos et al.   PLoS Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Root uptake regulation: a central process for NPS homeostasis in plants

(2009) Alain Gojon et al.   CURRENT OPINION IN PLANT BIOLOGY

The WRKY6 Transcription Factor Modulates PHOSPHATE1 Expression in Response to Low Pi Stress in Arabidopsis

(2009) Y.-F. Chen et al.   PLANT CELL

Histone H2A.Z Regulates the Expression of Several Classes of Phosphate Starvation Response Genes But Not as a Transcriptional Activator

(2009) A. P. Smith et al.   PLANT PHYSIOLOGY

The expression profile of genes in rice roots under low phosphorus stress

(2009) LiHua Li et al.   Science in China. Series C, Life sciences / Chinese Academy of Sciences

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Cellular mechanisms of potassium transport in plants

(2008) Dev T. Britto et al.   PHYSIOLOGIA PLANTARUM

Involvement ofOsSPX1in phosphate homeostasis in rice

(2008) Chuang Wang et al.   PLANT JOURNAL

Oxidative Pentose Phosphate Pathway-Dependent Sugar Sensing as a Mechanism for Regulation of Root Ion Transporters by Photosynthesis

(2008) L. Lejay et al.   PLANT PHYSIOLOGY