Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis

Genome-Wide Association Mapping Reveals Multiple QTLs Governing Tolerance Response for Seedling Stage Chilling Stress in Indica Rice

(2017) Elssa Pandit et al.   Frontiers in Plant Science

Recent Advances in Utilizing Transcription Factors to Improve Plant Abiotic Stress Tolerance by Transgenic Technology

(2016) Hongyan Wang et al.   Frontiers in Plant Science

Population Structure, Genetic Diversity and Molecular Marker-Trait Association Analysis for High Temperature Stress Tolerance in Rice

(2016) Sharat Kumar Pradhan et al.   PLoS One

Screening and classification of genotypes for seedling-stage chilling stress tolerance in rice and validation of the trait using SSR markers

(2015) S. K. Pradhan et al.   Plant Genetic Resources-Characterization and Utilization

Screening and classification of genotypes for seedling-stage chilling stress tolerance in rice and validation of the trait using SSR markers

(2015) S. K. Pradhan et al.   Plant Genetic Resources-Characterization and Utilization

Transcriptome analysis of rice root heterosis by RNA-Seq

(2013) Rongrong Zhai et al.   BMC GENOMICS

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

(2013) Mahantesha Naika et al.   PLANT AND CELL PHYSIOLOGY

The Low Temperature Induced Physiological Responses ofAvena nudaL., a Cold-Tolerant Plant Species

(2013) Wenying Liu et al.   TheScientificWorldJOURNAL

Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection

(2012) Bala R Thumma et al.   BMC GENOMICS

Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background

(2012) Fan Zhang et al.   BMC GENOMICS

Transcriptome analysis of rice root responses to potassium deficiency

(2012) Tian-Li Ma et al.   BMC PLANT BIOLOGY

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing

(2012) T. Kyndt et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac

(2012) YONG HU et al.   PLANT CELL AND ENVIRONMENT

Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes

(2012) Ting Zhang et al.   PLoS One

Genome-Wide Transcriptional Profiles during Temperature and Oxidative Stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice

(2012) Dheeraj Mittal et al.   PLoS One

Temperature stress differentially modulates transcription in meiotic anthers of heat-tolerant and heat-sensitive tomato plants

(2011) Craita E Bita et al.   BMC GENOMICS

mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress

(2011) Youko Oono et al.   Rice

Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

(2010) Sonali Dubey et al.   BMC GENOMICS

Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress

(2010) Kil-Young Yun et al.   BMC PLANT BIOLOGY

CBF-dependent signaling pathway: A key responder to low temperature stress in plants

(2010) M.Q. Zhou et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

(2010) T. Lu et al.   GENOME RESEARCH

Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice

(2010) Akhter Most Sharoni et al.   PLANT AND CELL PHYSIOLOGY

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

A Novel MYBS3-Dependent Pathway Confers Cold Tolerance in Rice

(2010) C. F. Su et al.   PLANT PHYSIOLOGY

Characterization of WRKY co-regulatory networks in rice and Arabidopsis

(2009) Stefano Berri et al.   BMC PLANT BIOLOGY

Transcriptional profiling of maturing tomato (Solanum lycopersicum L.) microspores reveals the involvement of heat shock proteins, ROS scavengers, hormones, and sugars in the heat stress response

(2009) Gil Frank et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses

(2009) K. Nakashima et al.   PLANT PHYSIOLOGY

Heat shock factor gene family in rice: Genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses

(2009) Dheeraj Mittal et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

A transcriptomic analysis of superhybrid rice LYP9 and its parents

(2009) G. Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Medium- and short-chain dehydrogenase/reductase gene and protein families

(2008) K. L. Kavanagh et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Trehalose Biosynthesis in Response to Abiotic Stresses

(2008) Mihaela Iordachescu et al.   Journal of Integrative Plant Biology

Reactive oxygen signaling and abiotic stress

(2008) Gad Miller et al.   PHYSIOLOGIA PLANTARUM

A Comprehensive Transcriptional Profiling of the WRKY Gene Family in Rice Under Various Abiotic and Phytohormone Treatments

(2008) Rengasamy Ramamoorthy et al.   PLANT AND CELL PHYSIOLOGY

Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses

(2008) PRAGYA KANT et al.   PLANT CELL AND ENVIRONMENT

Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes

(2008) Liang-Fa Ge et al.   PLANTA