A comparison of RNA extraction and sequencing protocols for detection of small RNAs in plasma
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Title
A comparison of RNA extraction and sequencing protocols for detection of small RNAs in plasma
Authors
Keywords
microRNA, miRNA, Small RNA-Seq, Circulating biomarker, Next generation sequencing, NGS, Plasma, Library preparation
Journal
BMC GENOMICS
Volume 20, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-06-04
DOI
10.1186/s12864-019-5826-7
References
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- (2018) Cloelia Dard-Dascot et al. BMC GENOMICS
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- (2018) Klaas E. A. Max et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2017) Wenjing Kang et al. RNA
- Circulating microRNAs as Potential Biomarkers of Infectious Disease
- (2017) Carolina N. Correia et al. Frontiers in Immunology
- Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow
- (2016) Dominik Buschmann et al. NUCLEIC ACIDS RESEARCH
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- (2016) Sabrina Shore et al. PLoS One
- Assessing cellular and circulating miRNA recovery: the impact of the RNA isolation method and the quantity of input material
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- Comparison of plasma extracellular RNA isolation kits reveals kit-dependent biases
- (2015) Xin Li et al. BIOTECHNIQUES
- Combining vitamin C and carotenoid biomarkers better predicts fruit and vegetable intake than individual biomarkers in dietary intervention studies
- (2015) Alanna J. McGrath et al. EUROPEAN JOURNAL OF NUTRITION
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- (2015) Kenneth W. Witwer JOURNAL OF NUTRITIONAL BIOCHEMISTRY
- Addressing Bias in Small RNA Library Preparation for Sequencing: A New Protocol Recovers MicroRNAs that Evade Capture by Current Methods
- (2015) Jeanette Baran-Gale et al. Frontiers in Genetics
- Bias in Ligation-Based Small RNA Sequencing Library Construction Is Determined by Adaptor and RNA Structure
- (2015) Ryan T. Fuchs et al. PLoS One
- Heatmap3: an improved heatmap package with more powerful and convenient features
- (2014) Shilin Zhao et al. BMC BIOINFORMATICS
- Universal screening test based on analysis of circulating organ-enriched microRNAs: a novel approach to diagnostic screening
- (2014) Kira S Sheinerman et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
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- (2014) Richard W. Lusk PLoS One
- Comparative RNA-sequencing analysis of myocardial and circulating small RNAs in human heart failure and their utility as biomarkers
- (2014) K. M. Akat et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Circulating microRNA profiles in human patients with acetaminophen hepatotoxicity or ischemic hepatitis
- (2014) J. Ward et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Quantification of Circulating miRNAs in Plasma
- (2013) Ioanna S. Sourvinou et al. JOURNAL OF MOLECULAR DIAGNOSTICS
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- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Comparison of Methods for miRNA Extraction from Plasma and Quantitative Recovery of RNA from Cerebrospinal Fluid
- (2013) Melissa A. McAlexander et al. Frontiers in Genetics
- Method for microRNA isolation from clinical serum samples
- (2012) Yu Li et al. ANALYTICAL BIOCHEMISTRY
- RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries
- (2011) M. Hafner et al. RNA
- miRBase: integrating microRNA annotation and deep-sequencing data
- (2010) A. Kozomara et al. NUCLEIC ACIDS RESEARCH
- Circulating microRNAs as stable blood-based markers for cancer detection
- (2008) P. S. Mitchell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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