4.8 Article

Multimodal Imaging of Amyloid Plaques: Fusion of the Single-Probe Mass Spectrometry Image and Fluorescence Microscopy Image

Journal

ANALYTICAL CHEMISTRY
Volume 91, Issue 20, Pages 12882-12889

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/acs.analchem.9b02792

Keywords

-

Funding

  1. National Institutes of Health [R01GM116116, R21CA204706, R01AG047928]
  2. Ministry of Science and Technology (MOST), R.O.C. [MOST 108-2636-M-002-008-]

Ask authors/readers for more resources

Alzheimer's disease (AD) is one of the most common neurodegenerative diseases. The formation of amyloid plaques by aggregated amyloid beta (A beta) peptides is a primary event in AD pathology. Understanding the metabolomic features and related pathways is critical for studying plaque-related pathological events (e.g., cell death and neuron dysfunction). Mass spectrometry imaging (MSI), due to its high sensitivity and ability to obtain the spatial distribution of metabolites, has been applied to AD studies. However, limited studies of metabolites in amyloid plaques have been performed due to the drawbacks of the commonly used techniques such as matrix-assisted laser desorption/ionization MSI. In the current study, we obtained high spatial resolution (similar to 17 mu m) MS images of the AD mouse brain using the Single-probe, a microscale sampling and ionization device, coupled to a mass spectrometer under ambient conditions. The adjacent slices were used to obtain fluorescence microscopy images to locate amyloid plaques. The MS image and the fluorescence microscopy image were fused to spatially correlate histological protein hallmarks with metabolomic features. The fused images produced significantly improved spatial resolution ( similar to 5 mu m), allowing for the determination of fine structures in MS images and metabolomic biomarkers representing amyloid plaques.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

Tau modification by the norepinephrine metabolite DOPEGAL stimulates its pathology and propagation

Seong Su Kang, Lanxia Meng, Xingyu Zhang, Zhiping Wu, Ariana Mancieri, Boer Xie, Xia Liu, David Weinshenker, Junmin Peng, Zhentao Zhang, Keqiang Ye

Summary: DOPEGAL, a metabolite of norepinephrine, covalently modifies tau and accelerates its aggregation and propagation, leading to cognitive deficits in Alzheimer's disease. The selective vulnerability of noradrenergic locus ceruleus (LC) neurons in AD may be explained by oxidation of norepinephrine via monoamine oxidase A (MAO-A) into DOPEGAL, which modifies tau and facilitates its aggregation, toxicity, and propagation.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2022)

Article Biochemistry & Molecular Biology

Molecular basis of crosstalk in nuclear receptors: heterodimerization between PXR and CAR and the implication in gene regulation

Monicah N. Bwayi, Efren Garcia-Maldonado, Sergio C. Chai, Boer Xie, Shirish Chodankar, Andrew D. Huber, Jing Wu, Kavya Annu, William C. Wright, Hyeong-Min Lee, Jayaraman Seetharaman, Jingheng Wang, Cameron D. Buchman, Junmin Peng, Taosheng Chen

Summary: The interactions between nuclear receptors can fundamentally change our understanding of their biology. In this study, the molecular basis of crosstalk between the pregnane X receptor (PXR) and constitutive androstane receptor (CAR) is revealed, demonstrating the formation of a novel heterodimer and mutual inhibition. These findings not only change the perceived functional relationship between PXR and CAR, but also provide new perspectives for elucidating their role and designing approaches to regulate them.

NUCLEIC ACIDS RESEARCH (2022)

Article Neurosciences

Proteomic Alterations and Novel Markers of Neurotoxic Reactive Astrocytes in Human Induced Pluripotent Stem Cell Models

David Labib, Zhen Wang, Priya Prakash, Matthew Zimmer, Matthew D. Smith, Paul W. Frazel, Lilianne Barbar, Maria L. Sapar, Peter A. Calabresi, Junmin Peng, Shane A. Liddelow, Valentina Fossati

Summary: The study investigated the surface marker profile and proteome of reactive astrocytes induced by proinflammatory factors and proposed several potential markers for this reactive sub-state. Colocalization of these markers with specific cells in post-mortem samples from Alzheimer's disease patients was observed. Proteomic analysis also identified proteins and pathways linked to potential engagement with peripheral immune cells.

FRONTIERS IN MOLECULAR NEUROSCIENCE (2022)

Article Oncology

Combining selinexor with alisertib to target the p53 pathway in neuroblastoma

Rosa Nguyen, Hong Wang, Ming Sun, Dong Geun Lee, Junmin Peng, Carol J. Thiele

Summary: This study suggests a potential therapeutic benefit in using selinexor and alisertib to synergistically increase p53-mediated cytotoxicity of high-risk neuroblastoma.

NEOPLASIA (2022)

Article Biochemistry & Molecular Biology

Evaluation of a Pooling Chemoproteomics Strategy with an FDA-Approved Drug Library

Huan Sun, Ka Yang, Xue Zhang, Yingxue Fu, Jay Yarbro, Zhiping Wu, Ping-Chung Chen, Taosheng Chen, Junmin Peng

Summary: Chemoproteomics is a crucial platform for studying the mode of action of compounds. This study presents a pooling strategy to enhance throughput and applies it to a drug library. The findings demonstrate that pooling chemoproteomics screening is an efficient method for dissecting the molecular targets of compound libraries.

BIOCHEMISTRY (2023)

Article Biochemistry & Molecular Biology

Ca2+-mediated mitochondrial inner membrane permeabilization induces cell death independently of Bax and Bak

Giovanni Quarato, Fabien Llambi, Cliff S. Guy, Jaeki Min, Marisa Actis, Huan Sun, Shilpa Narina, Shondra M. Pruett-Miller, Junmin Peng, Zoran Rankovic, Douglas R. Green

Summary: The imbalance of intracellular Ca2+ and mitochondrial Ca2+ overload can lead to mitochondrial inner membrane permeabilization and cell death, which is distinct from Bcl-2 family-regulated mitochondrial outer membrane permeabilization. Cyclosporin A can prevent cell death by inhibiting Ca2+ release from endoplasmic reticulum stores.

CELL DEATH AND DIFFERENTIATION (2022)

Article Neurosciences

Peripheral apoE4 enhances Alzheimer's pathology and impairs cognition by compromising cerebrovascular function

Chia-Chen Liu, Jing Zhao, Yuan Fu, Yasuteru Inoue, Yingxue Ren, Yuanxin Chen, Sydney V. Doss, Francis Shue, Suren Jeevaratnam, Ligia Bastea, Na Wang, Yuka A. Martens, Wenhui Qiao, Minghui Wang, Na Zhao, Lin Jia, Yu Yamazaki, Akari Yamazaki, Cassandra L. Rosenberg, Zhen Wang, Dehui Kong, Zonghua Li, Lindsey A. Kuchenbecker, Zachary A. Trottier, Lindsey Felton, Justin Rogers, Zachary S. Quicksall, Cynthia Linares, Joshua Knight, Yixing Chen, Aishe Kurti, Takahisa Kanekiyo, John D. Fryer, Yan W. Asmann, Peter Storz, Xusheng Wang, Junmin Peng, Bin Zhang, Betty Y. S. Kim, Guojun Bu

Summary: Peripheral apoE4 has detrimental effects on cognition and amyloid pathology by compromising vascular integrity and function. It impairs synaptic plasticity and cognition and influences functional pathways such as cell adhesion, lipoprotein metabolism, and complement activation. ApoE3 plasma from young mice improves cognition and reduces vessel-associated gliosis, while liver-expressed apoE4 exacerbates brain amyloid pathology.

NATURE NEUROSCIENCE (2022)

Article Biochemical Research Methods

29-Plex tandem mass tag mass spectrometry enabling accurate quantification by interference correction

Huan Sun, Suresh Poudel, David Vanderwall, Dong Geun Lee, Yuxin Li, Junmin Peng

Summary: Tandem mass tag (TMT) mass spectrometry is a popular labeling strategy for protein profiling. In this study, a 29-plex TMT method was developed and validated using pooled samples, demonstrating its ability to correct for noise and restore expected ratio values.

PROTEOMICS (2022)

Article Biochemical Research Methods

JUMPptm: Integrated software for sensitive identification of post-translational modifications and its application in Alzheimer's disease study

Suresh Poudel, David Vanderwall, Zuo-Fei Yuan, Zhiping Wu, Junmin Peng, Yuxin Li

Summary: A computational pipeline JUMPptm was presented to extract PTMs from unenriched whole proteome. The deep brain proteome of Alzheimer's disease (AD) was analyzed using JUMPptm, revealing dysregulated PTM peptides during AD progression and establishing a valuable pan-PTM profile for AD research.

PROTEOMICS (2023)

Article Chemistry, Analytical

MSIr: Automatic Registration Service for Mass Spectrometry Imaging and Histology

Bo-Jhang Lin, Tien-Chueh Kuo, Hsin-Hsiang Chung, Ying-Chen Huang, Ming-Yang Wang, Cheng-Chih Hsu, Po-Yang Yao, Yufeng Jane Tseng

Summary: Mass spectrometry imaging (MSI) is a powerful tool for investigating the spatial distribution of molecules in samples. However, analyzing complex biological systems often requires multiple analytical techniques. Image registration is a critical step for combining MSI with other imaging techniques, but it can be challenging due to differences in spatial resolution and image characteristics. In this study, a web service called MSI Registrar (MSIr) was developed for automatic registration between MSI and histology, providing a more objective and efficient way to analyze molecular components in tissues.

ANALYTICAL CHEMISTRY (2023)

Article Food Science & Technology

Ginger essential oil and citral ameliorates atherosclerosis in ApoE-/- mice by modulating trimethylamine-N-oxide and gut microbiota

Suraphan Panyod, Wei-Kai Wu, Sin-Yi Peng, Yea-Jing Tseng, Ya-Chi Hsieh, Rou-An Chen, Huai-Syuan Huang, Yi-Hsun Chen, Hsiao-Li Chuang, Cheng-Chih Hsu, Ting-Chin David Shen, Kai-Chien Yang, Chi-Tang Ho, Ming-Shiang Wu, Lee-Yan Sheen

Summary: Recently, the role of gut microbiota in diseases, including cardiovascular disease, has gained research attention. Ginger essential oil (GEO) and its bioactive compound citral have shown anti-atherosclerotic effects by improving lipid profile, blood sugar, insulin resistance, and reducing TMAO levels and inflammatory cytokines. They also modulate gut microbiota diversity and composition.

NPJ SCIENCE OF FOOD (2023)

Article Biochemistry & Molecular Biology

Garlic essential oil ameliorates depression-like behaviors in unpredictable chronic mild stress by modulating the brain NLRP3 inflammasome pathway and influencing the gut barrier and microbiota

Yun-Ju Huang, Min-Shiuan Tsai, Suraphan Panyod, Po-Yu Liu, Kuan-Hung Lu, Cheng-Yu Weng, Huai-Syuan Huang, Cheng-Chih Hsu, Lee-Yan Sheen

Summary: This study found that garlic essential oil and its active constituent diallyl disulfide have therapeutic effects on depressive behavior in an unpredictable chronic mild stress model by attenuating neuroinflammation, modulating intestinal barrier function, and influencing gut microbiota.

FOOD & FUNCTION (2023)

Article Chemistry, Multidisciplinary

Real-time bottom-up characterization of protein mixtures enabled by online microdroplet-assisted enzymatic digestion (MAED)

Cheng-Hua Ma, Chih-Lin Chen, Cheng-Chih Hsu

Summary: This study presents a simple and rapid online digestion platform called online microdroplet-assisted enzymatic digestion (MAED), which combines intact protein separation with enzymatic digestion in microdroplets. The method allows for rapid bottom-up analysis of protein mixtures and provides a more comprehensive characterization, particularly for low molecular weight proteins.

CHEMICAL COMMUNICATIONS (2023)

Article Agriculture, Multidisciplinary

On-Site Diagnosis of Poultry Coccidiosis by a Miniature Mass Spectrometer and Machine Learning

Wei-Chieh Wang, Hsin-Hsiang Chung, Ewelina P. Dutkiewicz, Jhih-Ying Wong, Wen-Chin Yang, Cicero Lee-Tian Chang, Cheng-Chih Hsu

Summary: Coccidiosis is a common parasitic disease in poultry that is typically diagnosed in a laboratory and observed 4 days after infection. Researchers have developed an on-site diagnostic platform using mass spectrometry to differentiate healthy chickens from those infected with Eimeria tenella. The platform achieved high accuracy and can diagnose infection 2 days earlier than current methods.

ACS AGRICULTURAL SCIENCE & TECHNOLOGY (2022)

Article Chemistry, Analytical

High-performance miniature linear time-of-flight mass spectrometry as an advantageous tool in a high mass-to-charge range

Ko-Keng Chang, Yi-Hong Cai, Chih-Hao Hsiao, Cheng-Chih Hsu, Yi-Sheng Wang

Summary: A miniature mass spectrometer suitable for high m/z region is described, which shows superior performance in terms of mass resolving power and sensitivity for microbial, protein conjugate, and polymer analyses.

ANALYST (2022)

No Data Available